Таблица MntR-2 к примеру 2а статьи К.Ю. Горбунова и В.А. Любецкого «Реконструкция предковых регуляторных сигналов вдоль дерева эволюции фактора транскрипции»


*MntR_entero*		consensus:	AAAYATAGCnnnnGCTATRTTT
*E.coli*
B2392	mntH	Mn transporter	AAACATAGCAaAGGCTATGTTT
B0817	mntR	Mn repressor	AgATATAGCAcAGGCTATATTa
B1821	?	? Transporter	AgACATAGCtTAGGCTATATTa
*S.typhi*
mntH	mntH	Mn transporter	AAACATAGCAaAGGCTATGTTT
STY0876	mntR	Mn repressor	AgATATAGCAcAGGCTATGTTT
STY1963	?	? Transporter	tAATATAGCtaAGGCTATATTT
sitA	sitABCD	iron transporter	tAACATAGCAaAGGCTATATTc
*K.pneumoniae*
098_0016	mntH	Mn transporter	AAACATAGCAaAGGCTATATTT
104_0100	mntR	Mn repressor	AgATATAGCAcAGGCTATATTT
096_0005	?	? Transporter	AAATATAGCCagcGCTATATTa

*MntR_XF_XC_MMA_MLO_RC*		consensus:	nnntATAGCanntGCTATannn
*Xanthomonas axonopodis*
smf2	mntH	Mn transporter / mntR	CAgcATAGCAacTGCTATAtca
*Xanthomonas campestris*
smf2	mntH	Mn transporter / mntR	CAgcATAGCACtTGCTATAtca
*Xylella fastodiosa*
XF1015	mntH	Mn transporter / mntR	CggTATAGCcaaTGCTATAAga
*Magnetospirillum magnetotacticum*
RMMA05305	mntH	Mn transporter / mntR	CtTTATAGCtCaTGCTATAAcc
*Rhodobacter capsulatus*
BS-ydaR	mntH	Mn transporter / mntR	aAaTATAGCcaagGCTAcAcTt
*Mesorhizobium loti*
RMLO02102	mntH	Mn transporter / mntR	CtTTATAGCACGgGCTcTgATt
*Mesorhizobium sp.*
MBNC03003581	mntR	mntR/divalent cation transporter?	aATTATAGCAaaTGCTATttca
			atccATAGCcgagGCTATAATG
*MntR_Bacilli*		consensus:	AAagTTgCcttaaGGaAACtTT
*B. subtilis*
ydaR	mntH	Mn transporter	tAAtTTgCCTTAAGGAAACTcT
ytgA	mntABCD	ABC Mn transporter	AAttTTgCaTgAgGGAAACTTT
*B. cereus*
BC1803	mntH	Mn transporter	tAAtTTgCaTTAAGGAAACTTT
BC0709	feoABB	ferrous iron transporter	AAAGTTTaCcTtAGGAAACTTT
BC2261	czcD	Cobalt-zinc-cadmium resistance protein czcD	tAttTTTCCTTtAcGAAACTTT
*B. halodurans*
BH1389	mntBC	ABC Mn transporter	AAAGTTTaCTTAgGGAAACTTT
BH2253	?		AAAGTTTCCTgAAGGAAAgaTa
BH2254	?-mutS	L-lysine aminomutase	tAtcTTTCCTTcAGGAAACTTT
psaA	mntA	ABC Mn transporter	tgttTTgCCTTggGGAAACTTT
BH2144		2,4-dienoyl-CoA reductase (NADPH) - fatty acids metabolism	AAtGTTgaCcTAAttcAACaTT
BH2145		transcriptional regulator (TetR/AcrR family)	AAtGTTgaaTTAgGtcAACaTT
BH1205		2-nitropropane dioxygenase	AAAGTTTCtcTgAaGAAACTTa
*Oceanobacillus iheyensis*
OB0431	mntABCD	ABC Mn transporter	AAAGTTTCCTTAgtGcAAaaaa
OB0431	mntABCD	ABC Mn transporter	AAAGTTTaCcTAAGGcAAaaTT
OB0851		?	AAAtTTgCaTacAaGAAAaTTT
OB0852		cytochrome c biogenesis	AAAtTTTCtTgtAtGcAAaTTT
OB1900	mntR	Mn repressor	AAtGTTgCCTgtgatAAAaaTT
*Listeria monocytogenes*
lmo1849	mntH	Mn transporter	AAAGTTgCtcTAAGGAAACaTT
lmo1424	mntBCA	ABC Mn transporter	AAtGTTTCCcgtAGtAAACTTT

*MntR_Strep*		consensus:	wwAATTAAnTnnAnTTAATTww
*Streptococcus pneumoniae*
RPN00195	mntCBA	ABC Mn transporter	AAAATTAAcTTgACTTAATTTT
*Streptococcus mutans*
RMN00602	mntCBA-mntR	ABC Mn transporter	AAAATTAAcTTgACTTAATTTT
*Streptococcus agalactiae*
RSAG01491	mntACB / mntR	ABC Mn transporter	AAAATTAAGTTAACTTAATTTa
*Streptococcus uberis*
RSUB00311	mntACB / mntR	ABC Mn transporter	AtAATTAAccatACTTAATTaa
*Streptococcus pyogenes*
RSPX00318	mntACB / mntR	ABC Mn transporter	AtAATTAAcTaAACTTAATTaa
*Streptococcus equi*
045_0051	mntACB / mntR	ABC Mn transporter	AtAATTAAcTatACTTAATTaa
RSEQ00901	nikABCD	~Nickel ABC transporter	tAAATTAAccatACTTAATTTT
*Lactococcus lactis*
RLLX01286	mntR	Mn repressor	AtAATTAAaTcAAgaaAAgTaa
RLLX01349	mntCBA	ABC Mn transporter	cAAAaTAtaTTgAtTTAATTTT

*Enterococcus faecalis*		consensus:	wTTTTAGGYnnRCCTAAAAw
EF2074	efaCBA (mntCBA)	ABC Mn transporter	TaTTTAGGTGCGCCTAAAAA
			TTTTaAGGCaaACCTAAAAA
EF1901	mntH1	Mn transporter	TTTTTAGGTGtGCCTAAAAg
EF1057	mntH2	Mn transporter	aTTTTAGGTGtACCTAAAAt

*Staphylococcus aureus*		consensus:	nnTTTAGGtnnaCCTAAAnn
SAV1088	mntH	Mn transporter	AATTTAGGTTgACCTAAACA
SAV0621	mntBCA / mntR	ABC Mn transporter	TAaTTAGGTTAgCCTAAACT
*Staphylococcus epidermidis*
SE0407	mntH	Mn transporter	AAaTTAGGTTAACCTAAACT
SE0803	mntBCA / mntR	ABC Mn transporter	TtTTTAGGTTgACCTAAtaT

*MntR_Meth_AG*		consensus:	TttTTAGGnnnnCCTAAttA
*Methanosarcina acetivorans*
	mntR-feoB	regulator, ferrous iron transporter	TTTTTAGGTTgtCCTAAtTA
*Methanosarcina barkeri*
RMBA03013	mntR-feoB	regulator, ferrous iron transporter	TTTTTAGGTTAtCCTAAtTA
*Methanosarcina mazei*
MM1034	mntR-feoB	regulator, ferrous iron transporter	TTTTTAGGTTgtCCTAAtTA

*MntR_AG*		consensus:	aaTTTAGGnTAnCCTAAAaa
*Archaeglobus fulgidus*
AF0561	feoB1-2-3-4	four tandem copies of ferrous iron transporter	AATTTAGGTTAACCTAAAaA
AF0246	feoB5-~mntR2	regulator, ferrous iron transporter	AATTTAGGTTAgCCTAAAaA
AF2396	feoA-mntR	regulator, ferrous iron transporter	cATTTAGGTTAACCTAAgag
AF0154	fepP*	~High-affinity Fe2+/Pb2+ permease	AATTTAGGcTAtCCTAAAcA

*MntR_MTH*		consensus:	nnnTTTAGGTnnAcCTAAAnnn
*Methanobacterium thermoautotrophicum*
MTH214	mntR-feoB2	regulator, ferrous iron transporter	TGaaTTAGGTTTAaCTAAACtA
MTH1362	feoAB	ferrous iron transporter	TGGTTTAGGTAAACCTAAAaCt
			TGaTTTAGGTgTAaCTAAAttt
*MntR_Pyrococci*		consensus:	waaATTAGGnnnnCCTAATaaw
*Pyrococcus furiosus*
PF0858	feoAB	ferrous iron transporter	TAaATTAGGTCGACCTAATATT
PF2026-31	minD1-frd-minD2	polyferredoxin	TAaATTAGGTttcCCTAATtTT
PF0722	ahpC	Alkyl hydroperoxide reductase	TAaATTAGGggaACCTAATtaA
PF0723	fepP*	~High-affinity Fe2+/Pb2+ permease	TATtTTAGaatGtCCTAATAaA
*Pyrococcus horikoshii*
RPH01106	feoAB	ferrous iron transporter	AAaATTAGGTtGcCCTAATAaT
*Pyrococcus abyssii*
PAB0708	feoAB	ferrous iron transporter	AAaATTAGGTtGgCCTAATAaA
PAB0577-8-9	red-minD1-2	FE-S oxidoreductase, polyferredoxin	TtTATTAGGTtacCCTAATATc

*MntR_Meth_2 (MAC03468)*		consensus:	ATTTTCGgATATcCGAAAAt
*Methanosarcina barkeri*
RMBA00945	feoAB2-XXX-mntR2	ferrous iron transporter	ATTTTCGgATATACGAAAAc
*Methanosarcina mazei*
MM2578	feoAB2-XXX-mntR2	ferrous iron transporter	ATTTTCGTATATgCGAAAAT
*Methanosarcina acetivorans*
MA3479	feoAB2-	ferrous iron transporter	ATTTTCGTATATACGAAAAT
MA3472	XXX-mntR2		ATTTTCGgATATACGAAAAT
MA2700			gTTTTtGgATATgCGAAAAT
MA4640		Biopolymer transport proteins	ATaTTCGgATATcCaAAAAT

*MntR_Meth_3_Zn (MAC00022)*		consensus:	TTTtGgnaTAtnCCaAAA
*Methanosarcina barkeri*
RMBA02469	znuACB	Zn ABC transporter (MntR3 upstream)	TTTGGGTtTATACCAAAA
			TTTGGGTAcActCCAAAt
*Methanosarcina mazei*
MM1333	znuACB	Zn ABC transporter (MntR3 upstream)	TTTGGtgtTATgCCAAAA
*Methanosarcina acetivorans*
znuA	znuACB	Zn ABC transporter (MntR3 upstream)	aTTTGGcATATcCCCAAA
			TTTGGaTATATgCCAAAt
MA4381	~cobW	~low-affinity transporter yciC (Histidine on C-terminus)	TTTGGGcATATACCAAtA
			TTTTGcctTATACCAAAA
*MntR_AG_3_Zn? (AG1984)*		consensus:	GTTYgYnnnRcRAAC
40AF1984	mntR3-znuACB?	Zn ABC transporter ?	GTTCGCTGtGCGAAC
			GTTTGTTAcAaAAAC

*Methanococci*		consensus:	wATTTAAccnnggTTAAATw
*Methanococcus jannaschii*
MJ0567	feoAB / mntR	regulator, ferrous iron transporter	tATTTAACTAcGGTTAAAaa
			AtTTTAACTATAaTTAAATc
			cATTTAACCATAtaTAAATg
*Methanococcus maripaludis*
feoA	feoAB / mntR	regulator, ferrous iron transporter	AATTTAAgCtaAGTTAAATT
feoB	feoB / mntR	regulator, ferrous iron transporter	tATTTAAgCtaGcTTAAATT
modA	modABD	Molybdenum ABC transporter	tATTTAtaTATGGTTAAATa

*MntR_PFI_CHU*		consensus:	TTTTTAGnnnnnnCTAAAAA
*Polaribacter filamentus*
RPFI02086	mntR-mntABCD	ABC Mn transporter	TTTTTAGtCTtACCTAAAAA
*Cytophaga hutchinsonii*
RCHU02072	mntR-mntABC	ABC Mn transporter	TTTTTAGaGcATCCTAAAAt

RCHU01262	mntR2 / tonB-dep. Heme receptor		aaGTTAGacttacCTAACaa

*Lactococcus lactis*			nTTwTAGnnnnnnCTAwAAn
RLLX01349	mntCBA	ABC Mn transporter	TTTTTAGGCcAtgCTAtAAt
RLLX01286	mntR	Mn repressor	ggTaTAGtCTAtgCTAtAAt

*MntR_Treponema*		consensus:	wATTTTGATnnATCAAAATw
*Treponema pallidum*
TP0163	troABCDR (mntABCDR)	ABC Mn transporter	TAcTTTGATGCATCAAAATT
*Treponema denticola*
RTDE01441	troABCDR (mntABCDR)	ABC Mn transporter	AATTTTGATATATCAAAATA



*MntR_TFU_RX*		consensus:	TtTTTTGgnnnnCCnAAAaa
*Thermobifida fusca*
RTFU01233	mntRABC		TGTTTtGGcggACCgAAACc
*Rubrobacter xylo*
#0011	mntR / mntH		TTTTTAGtTTAtCCTAAAAA

*Corynebacteria*		consensus:	ncTTGTsnnnnsACAngn

Cgl2477			tCTTGTCcgTAGACACac

DIP0612			CCTTGTGcgTAGACATGc

CE0648			CCATGTGTAgACACACtG