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05/12/21
13:18:27

Лаборатория математических методов и моделей в биоинформатике
Института проблем передачи информации им. А.А. Харкевича
Российской академии наук

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Таблица MntR-2 к примеру 2а статьи К.Ю. Горбунова и В.А. Любецкого «Реконструкция предковых регуляторных сигналов вдоль дерева эволюции фактора транскрипции»

       
MntR_entero   consensus: AAAYATAGCnnnnGCTATRTTT
E.coli      
B2392 mntH Mn transporter AAACATAGCAaAGGCTATGTTT
B0817 mntR Mn repressor AgATATAGCAcAGGCTATATTa
B1821 ? ? Transporter AgACATAGCtTAGGCTATATTa
S.typhi      
mntH mntH Mn transporter AAACATAGCAaAGGCTATGTTT
STY0876 mntR Mn repressor AgATATAGCAcAGGCTATGTTT
STY1963 ? ? Transporter tAATATAGCtaAGGCTATATTT
sitA sitABCD iron transporter tAACATAGCAaAGGCTATATTc
K.pneumoniae    
098_0016 mntH Mn transporter AAACATAGCAaAGGCTATATTT
104_0100 mntR Mn repressor AgATATAGCAcAGGCTATATTT
096_0005 ? ? Transporter AAATATAGCCagcGCTATATTa
       
MntR_XF_XC_MMA_MLO_RC consensus: nnntATAGCanntGCTATannn
Xanthomonas axonopodis    
smf2 mntH Mn transporter / mntR CAgcATAGCAacTGCTATAtca
Xanthomonas campestris    
smf2 mntH Mn transporter / mntR CAgcATAGCACtTGCTATAtca
Xylella fastodiosa    
XF1015 mntH Mn transporter / mntR CggTATAGCcaaTGCTATAAga
Magnetospirillum magnetotacticum  
RMMA05305 mntH Mn transporter / mntR CtTTATAGCtCaTGCTATAAcc
Rhodobacter capsulatus    
BS-ydaR mntH Mn transporter / mntR aAaTATAGCcaagGCTAcAcTt
Mesorhizobium loti    
RMLO02102 mntH Mn transporter / mntR CtTTATAGCACGgGCTcTgATt
Mesorhizobium sp.    
MBNC03003581 mntR mntR/divalent cation transporter? aATTATAGCAaaTGCTATttca
       atccATAGCcgagGCTATAATG
MntR_Bacilli   consensus: AAagTTgCcttaaGGaAACtTT
B. subtilis      
ydaR mntH Mn transporter tAAtTTgCCTTAAGGAAACTcT
ytgA mntABCD ABC Mn transporter AAttTTgCaTgAgGGAAACTTT
B. cereus      
BC1803 mntH Mn transporter tAAtTTgCaTTAAGGAAACTTT
BC0709 feoABB ferrous iron transporter AAAGTTTaCcTtAGGAAACTTT
BC2261 czcD Cobalt-zinc-cadmium resistance protein czcD tAttTTTCCTTtAcGAAACTTT
B. halodurans    
BH1389 mntBC ABC Mn transporter AAAGTTTaCTTAgGGAAACTTT
BH2253 ?   AAAGTTTCCTgAAGGAAAgaTa
BH2254 ?-mutS L-lysine aminomutase tAtcTTTCCTTcAGGAAACTTT
psaA mntA ABC Mn transporter tgttTTgCCTTggGGAAACTTT
BH2144   2,4-dienoyl-CoA reductase (NADPH) - fatty acids metabolism AAtGTTgaCcTAAttcAACaTT
BH2145   transcriptional regulator (TetR/AcrR family) AAtGTTgaaTTAgGtcAACaTT
BH1205   2-nitropropane dioxygenase AAAGTTTCtcTgAaGAAACTTa
Oceanobacillus iheyensis    
OB0431 mntABCD ABC Mn transporter AAAGTTTCCTTAgtGcAAaaaa
OB0431 mntABCD ABC Mn transporter AAAGTTTaCcTAAGGcAAaaTT
OB0851   ? AAAtTTgCaTacAaGAAAaTTT
OB0852   cytochrome c biogenesis AAAtTTTCtTgtAtGcAAaTTT
OB1900 mntR Mn repressor AAtGTTgCCTgtgatAAAaaTT
Listeria monocytogenes    
lmo1849 mntH Mn transporter AAAGTTgCtcTAAGGAAACaTT
lmo1424 mntBCA ABC Mn transporter AAtGTTTCCcgtAGtAAACTTT
       
MntR_Strep   consensus: wwAATTAAnTnnAnTTAATTww
Streptococcus pneumoniae    
RPN00195 mntCBA ABC Mn transporter AAAATTAAcTTgACTTAATTTT
Streptococcus mutans    
RMN00602 mntCBA-mntR ABC Mn transporter AAAATTAAcTTgACTTAATTTT
Streptococcus agalactiae    
RSAG01491 mntACB / mntR ABC Mn transporter AAAATTAAGTTAACTTAATTTa
Streptococcus uberis    
RSUB00311 mntACB / mntR ABC Mn transporter AtAATTAAccatACTTAATTaa
Streptococcus pyogenes    
RSPX00318 mntACB / mntR ABC Mn transporter AtAATTAAcTaAACTTAATTaa
Streptococcus equi    
045_0051 mntACB / mntR ABC Mn transporter AtAATTAAcTatACTTAATTaa
RSEQ00901 nikABCD ~Nickel ABC transporter tAAATTAAccatACTTAATTTT
Lactococcus lactis    
RLLX01286 mntR Mn repressor AtAATTAAaTcAAgaaAAgTaa
RLLX01349 mntCBA ABC Mn transporter cAAAaTAtaTTgAtTTAATTTT
       
Enterococcus faecalis consensus: wTTTTAGGYnnRCCTAAAAw
EF2074 efaCBA (mntCBA) ABC Mn transporter TaTTTAGGTGCGCCTAAAAA
      TTTTaAGGCaaACCTAAAAA
EF1901 mntH1 Mn transporter TTTTTAGGTGtGCCTAAAAg
EF1057 mntH2 Mn transporter aTTTTAGGTGtACCTAAAAt
       
Staphylococcus aureus consensus: nnTTTAGGtnnaCCTAAAnn
SAV1088 mntH Mn transporter AATTTAGGTTgACCTAAACA
SAV0621 mntBCA / mntR ABC Mn transporter TAaTTAGGTTAgCCTAAACT
Staphylococcus epidermidis    
SE0407 mntH Mn transporter AAaTTAGGTTAACCTAAACT
SE0803 mntBCA / mntR ABC Mn transporter TtTTTAGGTTgACCTAAtaT
       
MntR_Meth_AG consensus: TttTTAGGnnnnCCTAAttA
Methanosarcina acetivorans    
  mntR-feoB regulator, ferrous iron transporter TTTTTAGGTTgtCCTAAtTA
Methanosarcina barkeri    
RMBA03013 mntR-feoB regulator, ferrous iron transporter TTTTTAGGTTAtCCTAAtTA
Methanosarcina mazei    
MM1034 mntR-feoB regulator, ferrous iron transporter TTTTTAGGTTgtCCTAAtTA
       
MntR_AG   consensus: aaTTTAGGnTAnCCTAAAaa
Archaeglobus fulgidus    
AF0561 feoB1-2-3-4 four tandem copies of ferrous iron transporter AATTTAGGTTAACCTAAAaA
AF0246 feoB5-~mntR2 regulator, ferrous iron transporter AATTTAGGTTAgCCTAAAaA
AF2396 feoA-mntR regulator, ferrous iron transporter cATTTAGGTTAACCTAAgag
AF0154 fepP* ~High-affinity Fe2+/Pb2+ permease AATTTAGGcTAtCCTAAAcA
     
MntR_MTH   consensus: nnnTTTAGGTnnAcCTAAAnnn
Methanobacterium thermoautotrophicum  
MTH214 mntR-feoB2 regulator, ferrous iron transporter TGaaTTAGGTTTAaCTAAACtA
MTH1362 feoAB ferrous iron transporter TGGTTTAGGTAAACCTAAAaCt
      TGaTTTAGGTgTAaCTAAAttt
MntR_Pyrococci consensus: waaATTAGGnnnnCCTAATaaw
Pyrococcus furiosus    
PF0858 feoAB ferrous iron transporter TAaATTAGGTCGACCTAATATT
PF2026-31 minD1-frd-minD2 polyferredoxin TAaATTAGGTttcCCTAATtTT
PF0722 ahpC Alkyl hydroperoxide reductase TAaATTAGGggaACCTAATtaA
PF0723 fepP* ~High-affinity Fe2+/Pb2+ permease TATtTTAGaatGtCCTAATAaA
Pyrococcus horikoshii    
RPH01106 feoAB ferrous iron transporter AAaATTAGGTtGcCCTAATAaT
Pyrococcus abyssii    
PAB0708 feoAB ferrous iron transporter AAaATTAGGTtGgCCTAATAaA
PAB0577-8-9 red-minD1-2 FE-S oxidoreductase, polyferredoxin TtTATTAGGTtacCCTAATATc
       
MntR_Meth_2 (MAC03468) consensus: ATTTTCGgATATcCGAAAAt
Methanosarcina barkeri    
RMBA00945 feoAB2-XXX-mntR2 ferrous iron transporter ATTTTCGgATATACGAAAAc
Methanosarcina mazei    
MM2578 feoAB2-XXX-mntR2 ferrous iron transporter ATTTTCGTATATgCGAAAAT
Methanosarcina acetivorans    
MA3479 feoAB2- ferrous iron transporter ATTTTCGTATATACGAAAAT
MA3472 XXX-mntR2   ATTTTCGgATATACGAAAAT
MA2700     gTTTTtGgATATgCGAAAAT
MA4640   Biopolymer transport proteins ATaTTCGgATATcCaAAAAT
       
MntR_Meth_3_Zn (MAC00022) consensus:   TTTtGgnaTAtnCCaAAA
Methanosarcina barkeri    
RMBA02469 znuACB Zn ABC transporter (MntR3 upstream)   TTTGGGTtTATACCAAAA
        TTTGGGTAcActCCAAAt
Methanosarcina mazei    
MM1333 znuACB Zn ABC transporter (MntR3 upstream)   TTTGGtgtTATgCCAAAA
Methanosarcina acetivorans    
znuA znuACB Zn ABC transporter (MntR3 upstream)   aTTTGGcATATcCCCAAA
        TTTGGaTATATgCCAAAt
MA4381 ~cobW ~low-affinity transporter yciC (Histidine on C-terminus)   TTTGGGcATATACCAAtA
        TTTTGcctTATACCAAAA
MntR_AG_3_Zn? (AG1984) consensus:    GTTYgYnnnRcRAAC
40AF1984 mntR3-znuACB? Zn ABC transporter ?    GTTCGCTGtGCGAAC
         GTTTGTTAcAaAAAC
       
Methanococci consensus: wATTTAAccnnggTTAAATw
Methanococcus jannaschii    
MJ0567 feoAB / mntR regulator, ferrous iron transporter tATTTAACTAcGGTTAAAaa
      AtTTTAACTATAaTTAAATc
      cATTTAACCATAtaTAAATg
Methanococcus maripaludis    
feoA feoAB / mntR regulator, ferrous iron transporter AATTTAAgCtaAGTTAAATT
feoB feoB / mntR regulator, ferrous iron transporter tATTTAAgCtaGcTTAAATT
modA modABD Molybdenum ABC transporter tATTTAtaTATGGTTAAATa
       
MntR_PFI_CHU consensus: TTTTTAGnnnnnnCTAAAAA
Polaribacter filamentus    
RPFI02086 mntR-mntABCD ABC Mn transporter TTTTTAGtCTtACCTAAAAA
Cytophaga hutchinsonii    
RCHU02072 mntR-mntABC ABC Mn transporter TTTTTAGaGcATCCTAAAAt
       
RCHU01262 mntR2 / tonB-dep. Heme receptor aaGTTAGacttacCTAACaa
       
Lactococcus lactis   nTTwTAGnnnnnnCTAwAAn
RLLX01349 mntCBA ABC Mn transporter TTTTTAGGCcAtgCTAtAAt
RLLX01286 mntR Mn repressor ggTaTAGtCTAtgCTAtAAt
       
MntR_Treponema consensus: wATTTTGATnnATCAAAATw
Treponema pallidum    
TP0163 troABCDR (mntABCDR) ABC Mn transporter TAcTTTGATGCATCAAAATT
Treponema denticola    
RTDE01441 troABCDR (mntABCDR) ABC Mn transporter AATTTTGATATATCAAAATA
       
       
       
MntR_TFU_RX consensus: TtTTTTGgnnnnCCnAAAaa
Thermobifida fusca    
RTFU01233 mntRABC   TGTTTtGGcggACCgAAACc
Rubrobacter xylo    
#0011 mntR / mntH   TTTTTAGtTTAtCCTAAAAA
       
Corynebacteria consensus: ncTTGTsnnnnsACAngn
       
Cgl2477     tCTTGTCcgTAGACACac
       
DIP0612     CCTTGTGcgTAGACATGc
       
CE0648     CCATGTGTAgACACACtG
       
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