21/01/25
14:05:43
14:05:43
Лаборатория математических методов и моделей в биоинформатике
Института проблем передачи информации им. А.А. Харкевича
Российской академии наук
Русский :: English
Таблица MntR-2 к примеру 2а статьи К.Ю. Горбунова и В.А. Любецкого «Реконструкция предковых регуляторных сигналов вдоль дерева эволюции фактора транскрипции»
| MntR_entero | consensus: | AAAYATAGCnnnnGCTATRTTT | |
| E.coli | |||
| B2392 | mntH | Mn transporter | AAACATAGCAaAGGCTATGTTT |
| B0817 | mntR | Mn repressor | AgATATAGCAcAGGCTATATTa |
| B1821 | ? | ? Transporter | AgACATAGCtTAGGCTATATTa |
| S.typhi | |||
| mntH | mntH | Mn transporter | AAACATAGCAaAGGCTATGTTT |
| STY0876 | mntR | Mn repressor | AgATATAGCAcAGGCTATGTTT |
| STY1963 | ? | ? Transporter | tAATATAGCtaAGGCTATATTT |
| sitA | sitABCD | iron transporter | tAACATAGCAaAGGCTATATTc |
| K.pneumoniae | |||
| 098_0016 | mntH | Mn transporter | AAACATAGCAaAGGCTATATTT |
| 104_0100 | mntR | Mn repressor | AgATATAGCAcAGGCTATATTT |
| 096_0005 | ? | ? Transporter | AAATATAGCCagcGCTATATTa |
| MntR_XF_XC_MMA_MLO_RC | consensus: | nnntATAGCanntGCTATannn | |
| Xanthomonas axonopodis | |||
| smf2 | mntH | Mn transporter / mntR | CAgcATAGCAacTGCTATAtca |
| Xanthomonas campestris | |||
| smf2 | mntH | Mn transporter / mntR | CAgcATAGCACtTGCTATAtca |
| Xylella fastodiosa | |||
| XF1015 | mntH | Mn transporter / mntR | CggTATAGCcaaTGCTATAAga |
| Magnetospirillum magnetotacticum | |||
| RMMA05305 | mntH | Mn transporter / mntR | CtTTATAGCtCaTGCTATAAcc |
| Rhodobacter capsulatus | |||
| BS-ydaR | mntH | Mn transporter / mntR | aAaTATAGCcaagGCTAcAcTt |
| Mesorhizobium loti | |||
| RMLO02102 | mntH | Mn transporter / mntR | CtTTATAGCACGgGCTcTgATt |
| Mesorhizobium sp. | |||
| MBNC03003581 | mntR | mntR/divalent cation transporter? | aATTATAGCAaaTGCTATttca |
| atccATAGCcgagGCTATAATG | |||
| MntR_Bacilli | consensus: | AAagTTgCcttaaGGaAACtTT | |
| B. subtilis | |||
| ydaR | mntH | Mn transporter | tAAtTTgCCTTAAGGAAACTcT |
| ytgA | mntABCD | ABC Mn transporter | AAttTTgCaTgAgGGAAACTTT |
| B. cereus | |||
| BC1803 | mntH | Mn transporter | tAAtTTgCaTTAAGGAAACTTT |
| BC0709 | feoABB | ferrous iron transporter | AAAGTTTaCcTtAGGAAACTTT |
| BC2261 | czcD | Cobalt-zinc-cadmium resistance protein czcD | tAttTTTCCTTtAcGAAACTTT |
| B. halodurans | |||
| BH1389 | mntBC | ABC Mn transporter | AAAGTTTaCTTAgGGAAACTTT |
| BH2253 | ? | AAAGTTTCCTgAAGGAAAgaTa | |
| BH2254 | ?-mutS | L-lysine aminomutase | tAtcTTTCCTTcAGGAAACTTT |
| psaA | mntA | ABC Mn transporter | tgttTTgCCTTggGGAAACTTT |
| BH2144 | 2,4-dienoyl-CoA reductase (NADPH) - fatty acids metabolism | AAtGTTgaCcTAAttcAACaTT | |
| BH2145 | transcriptional regulator (TetR/AcrR family) | AAtGTTgaaTTAgGtcAACaTT | |
| BH1205 | 2-nitropropane dioxygenase | AAAGTTTCtcTgAaGAAACTTa | |
| Oceanobacillus iheyensis | |||
| OB0431 | mntABCD | ABC Mn transporter | AAAGTTTCCTTAgtGcAAaaaa |
| OB0431 | mntABCD | ABC Mn transporter | AAAGTTTaCcTAAGGcAAaaTT |
| OB0851 | ? | AAAtTTgCaTacAaGAAAaTTT | |
| OB0852 | cytochrome c biogenesis | AAAtTTTCtTgtAtGcAAaTTT | |
| OB1900 | mntR | Mn repressor | AAtGTTgCCTgtgatAAAaaTT |
| Listeria monocytogenes | |||
| lmo1849 | mntH | Mn transporter | AAAGTTgCtcTAAGGAAACaTT |
| lmo1424 | mntBCA | ABC Mn transporter | AAtGTTTCCcgtAGtAAACTTT |
| MntR_Strep | consensus: | wwAATTAAnTnnAnTTAATTww | |
| Streptococcus pneumoniae | |||
| RPN00195 | mntCBA | ABC Mn transporter | AAAATTAAcTTgACTTAATTTT |
| Streptococcus mutans | |||
| RMN00602 | mntCBA-mntR | ABC Mn transporter | AAAATTAAcTTgACTTAATTTT |
| Streptococcus agalactiae | |||
| RSAG01491 | mntACB / mntR | ABC Mn transporter | AAAATTAAGTTAACTTAATTTa |
| Streptococcus uberis | |||
| RSUB00311 | mntACB / mntR | ABC Mn transporter | AtAATTAAccatACTTAATTaa |
| Streptococcus pyogenes | |||
| RSPX00318 | mntACB / mntR | ABC Mn transporter | AtAATTAAcTaAACTTAATTaa |
| Streptococcus equi | |||
| 045_0051 | mntACB / mntR | ABC Mn transporter | AtAATTAAcTatACTTAATTaa |
| RSEQ00901 | nikABCD | ~Nickel ABC transporter | tAAATTAAccatACTTAATTTT |
| Lactococcus lactis | |||
| RLLX01286 | mntR | Mn repressor | AtAATTAAaTcAAgaaAAgTaa |
| RLLX01349 | mntCBA | ABC Mn transporter | cAAAaTAtaTTgAtTTAATTTT |
| Enterococcus faecalis | consensus: | wTTTTAGGYnnRCCTAAAAw | |
| EF2074 | efaCBA (mntCBA) | ABC Mn transporter | TaTTTAGGTGCGCCTAAAAA |
| TTTTaAGGCaaACCTAAAAA | |||
| EF1901 | mntH1 | Mn transporter | TTTTTAGGTGtGCCTAAAAg |
| EF1057 | mntH2 | Mn transporter | aTTTTAGGTGtACCTAAAAt |
| Staphylococcus aureus | consensus: | nnTTTAGGtnnaCCTAAAnn | |
| SAV1088 | mntH | Mn transporter | AATTTAGGTTgACCTAAACA |
| SAV0621 | mntBCA / mntR | ABC Mn transporter | TAaTTAGGTTAgCCTAAACT |
| Staphylococcus epidermidis | |||
| SE0407 | mntH | Mn transporter | AAaTTAGGTTAACCTAAACT |
| SE0803 | mntBCA / mntR | ABC Mn transporter | TtTTTAGGTTgACCTAAtaT |
| MntR_Meth_AG | consensus: | TttTTAGGnnnnCCTAAttA | |
| Methanosarcina acetivorans | |||
| mntR-feoB | regulator, ferrous iron transporter | TTTTTAGGTTgtCCTAAtTA | |
| Methanosarcina barkeri | |||
| RMBA03013 | mntR-feoB | regulator, ferrous iron transporter | TTTTTAGGTTAtCCTAAtTA |
| Methanosarcina mazei | |||
| MM1034 | mntR-feoB | regulator, ferrous iron transporter | TTTTTAGGTTgtCCTAAtTA |
| MntR_AG | consensus: | aaTTTAGGnTAnCCTAAAaa | |
| Archaeglobus fulgidus | |||
| AF0561 | feoB1-2-3-4 | four tandem copies of ferrous iron transporter | AATTTAGGTTAACCTAAAaA |
| AF0246 | feoB5-~mntR2 | regulator, ferrous iron transporter | AATTTAGGTTAgCCTAAAaA |
| AF2396 | feoA-mntR | regulator, ferrous iron transporter | cATTTAGGTTAACCTAAgag |
| AF0154 | fepP* | ~High-affinity Fe2+/Pb2+ permease | AATTTAGGcTAtCCTAAAcA |
| MntR_MTH | consensus: | nnnTTTAGGTnnAcCTAAAnnn | |
| Methanobacterium thermoautotrophicum | |||
| MTH214 | mntR-feoB2 | regulator, ferrous iron transporter | TGaaTTAGGTTTAaCTAAACtA |
| MTH1362 | feoAB | ferrous iron transporter | TGGTTTAGGTAAACCTAAAaCt |
| TGaTTTAGGTgTAaCTAAAttt | |||
| MntR_Pyrococci | consensus: | waaATTAGGnnnnCCTAATaaw | |
| Pyrococcus furiosus | |||
| PF0858 | feoAB | ferrous iron transporter | TAaATTAGGTCGACCTAATATT |
| PF2026-31 | minD1-frd-minD2 | polyferredoxin | TAaATTAGGTttcCCTAATtTT |
| PF0722 | ahpC | Alkyl hydroperoxide reductase | TAaATTAGGggaACCTAATtaA |
| PF0723 | fepP* | ~High-affinity Fe2+/Pb2+ permease | TATtTTAGaatGtCCTAATAaA |
| Pyrococcus horikoshii | |||
| RPH01106 | feoAB | ferrous iron transporter | AAaATTAGGTtGcCCTAATAaT |
| Pyrococcus abyssii | |||
| PAB0708 | feoAB | ferrous iron transporter | AAaATTAGGTtGgCCTAATAaA |
| PAB0577-8-9 | red-minD1-2 | FE-S oxidoreductase, polyferredoxin | TtTATTAGGTtacCCTAATATc |
| MntR_Meth_2 (MAC03468) | consensus: | ATTTTCGgATATcCGAAAAt | |
| Methanosarcina barkeri | |||
| RMBA00945 | feoAB2-XXX-mntR2 | ferrous iron transporter | ATTTTCGgATATACGAAAAc |
| Methanosarcina mazei | |||
| MM2578 | feoAB2-XXX-mntR2 | ferrous iron transporter | ATTTTCGTATATgCGAAAAT |
| Methanosarcina acetivorans | |||
| MA3479 | feoAB2- | ferrous iron transporter | ATTTTCGTATATACGAAAAT |
| MA3472 | XXX-mntR2 | ATTTTCGgATATACGAAAAT | |
| MA2700 | gTTTTtGgATATgCGAAAAT | ||
| MA4640 | Biopolymer transport proteins | ATaTTCGgATATcCaAAAAT | |
| MntR_Meth_3_Zn (MAC00022) | consensus: | TTTtGgnaTAtnCCaAAA | |
| Methanosarcina barkeri | |||
| RMBA02469 | znuACB | Zn ABC transporter (MntR3 upstream) | TTTGGGTtTATACCAAAA |
| TTTGGGTAcActCCAAAt | |||
| Methanosarcina mazei | |||
| MM1333 | znuACB | Zn ABC transporter (MntR3 upstream) | TTTGGtgtTATgCCAAAA |
| Methanosarcina acetivorans | |||
| znuA | znuACB | Zn ABC transporter (MntR3 upstream) | aTTTGGcATATcCCCAAA |
| TTTGGaTATATgCCAAAt | |||
| MA4381 | ~cobW | ~low-affinity transporter yciC (Histidine on C-terminus) | TTTGGGcATATACCAAtA |
| TTTTGcctTATACCAAAA | |||
| MntR_AG_3_Zn? (AG1984) | consensus: | GTTYgYnnnRcRAAC | |
| 40AF1984 | mntR3-znuACB? | Zn ABC transporter ? | GTTCGCTGtGCGAAC |
| GTTTGTTAcAaAAAC | |||
| Methanococci | consensus: | wATTTAAccnnggTTAAATw | |
| Methanococcus jannaschii | |||
| MJ0567 | feoAB / mntR | regulator, ferrous iron transporter | tATTTAACTAcGGTTAAAaa |
| AtTTTAACTATAaTTAAATc | |||
| cATTTAACCATAtaTAAATg | |||
| Methanococcus maripaludis | |||
| feoA | feoAB / mntR | regulator, ferrous iron transporter | AATTTAAgCtaAGTTAAATT |
| feoB | feoB / mntR | regulator, ferrous iron transporter | tATTTAAgCtaGcTTAAATT |
| modA | modABD | Molybdenum ABC transporter | tATTTAtaTATGGTTAAATa |
| MntR_PFI_CHU | consensus: | TTTTTAGnnnnnnCTAAAAA | |
| Polaribacter filamentus | |||
| RPFI02086 | mntR-mntABCD | ABC Mn transporter | TTTTTAGtCTtACCTAAAAA |
| Cytophaga hutchinsonii | |||
| RCHU02072 | mntR-mntABC | ABC Mn transporter | TTTTTAGaGcATCCTAAAAt |
| RCHU01262 | mntR2 / tonB-dep. Heme receptor | aaGTTAGacttacCTAACaa | |
| Lactococcus lactis | nTTwTAGnnnnnnCTAwAAn | ||
| RLLX01349 | mntCBA | ABC Mn transporter | TTTTTAGGCcAtgCTAtAAt |
| RLLX01286 | mntR | Mn repressor | ggTaTAGtCTAtgCTAtAAt |
| MntR_Treponema | consensus: | wATTTTGATnnATCAAAATw | |
| Treponema pallidum | |||
| TP0163 | troABCDR (mntABCDR) | ABC Mn transporter | TAcTTTGATGCATCAAAATT |
| Treponema denticola | |||
| RTDE01441 | troABCDR (mntABCDR) | ABC Mn transporter | AATTTTGATATATCAAAATA |
| MntR_TFU_RX | consensus: | TtTTTTGgnnnnCCnAAAaa | |
| Thermobifida fusca | |||
| RTFU01233 | mntRABC | TGTTTtGGcggACCgAAACc | |
| Rubrobacter xylo | |||
| #0011 | mntR / mntH | TTTTTAGtTTAtCCTAAAAA | |
| Corynebacteria | consensus: | ncTTGTsnnnnsACAngn | |
| Cgl2477 | tCTTGTCcgTAGACACac | ||
| DIP0612 | CCTTGTGcgTAGACATGc | ||
| CE0648 | CCATGTGTAgACACACtG | ||