Таблица NrdR-2 к примеру 1а статьи К.Ю. Горбунова и В.А. Любецкого «Реконструкция предковых регуляторных сигналов вдоль дерева эволюции фактора транскрипции»
| Nrd-regulon. | |
| Gamma-Proteobacteria | |
| E.coli | |
| NrdAB | tCACacTATcTtGcag |
| cCcCTATATATAGTGT | |
| NrdHIEF | ttgCTATATATtGTGT |
| caACTAcATcTAGTaT | |
| NrdDG | gCACTATATATAGacT |
| ACcCaATATgTtGTaT | |
| S.typhi | |
| NrdAB | ACtCaccATATAGcGT |
| cCcCTATATATAGTaT | |
| NrdHIEF | ttcCcATATcTtGTaT |
| caACTAcATcTAGTaT | |
| NrdDG | tCACTAcATATAGacT |
| ACcCaATATgTtGTaT | |
| K.pneumoniae | |
| 103_0209 (nrdAB) | ACtCaccATATAGcGT |
| cCcCTAcATATAGTaT | |
| 123_0082 (nrdHIEF) | ACgCTATATATtGaGT |
| taACTAcATcTAGTaT | |
| 121_0512 (nrdDG) | tCACTAcATATAGaac |
| gCcCaAcATATtGTaT | |
| tCACcATATcTtGTcg | |
| Y.pestis | |
| NrdAB | ACtCacTATcTtGTta |
| cCACTATATATtGTGT | |
| NrdHIEF | taACTAcATgTAGTGT |
| gCACTAcATATAGTaT | |
| NrdDG | tacCcATATATAGTGT |
| catCTATATgTAGTag | |
| Y.enterocolitica | |
| RYE01840 (nrdAB) | ACtCacTATcTtGTta |
| cCcCTATATATtGTGT | |
| RYE01342 (nrdHIEF) | ACACTAgATATAGTaT |
| taACTAcATATgGTGT | |
| RYE00867 (nrdDG) | tacCcATATATAGTGT |
| tacCTATATgTAGTag | |
| E.chrysanthemi | |
| 001_3356 (nrdAB) | tCACatTATcTtGTta |
| cCcCTATATATAGTGT | |
| 001_0534 (nrdHIEF) | cttCTATATATtGcGT |
| ACACaATATcTAGTaT | |
| 001_2422 (nrdDG) | AttCaATATATAGTGT |
| AacCTAcATATtGTGT | |
| E.carotovora | |
| NrdAB | ACtCaccATgTAGTag |
| cacCTATATcTAGTaT | |
| NrdHIEF | AtcaTATATcTtGTGT |
| tatCTAcATcTAGTaT | |
| NrdDG | tttCaATATATAGTGc |
| tacCTAcATATAGTGT | |
| Photorhabdus luminescens | |
| NrdAB | taACatTATcTtGTtg |
| cCcCTAcATATtGTGT | |
| NrdHIEF | ACACcATATATAGTGc |
| tCACTAcATATAGTaT | |
| NrdDG | ttACTATATATtGTGT |
| AgACTATATATAGcaa | |
| H.influenzae | |
| HI1659 (nrdAB) | ACACatTATcTtGTGg |
| ACACTATATcTtGTGT | |
| HI0075 (nrdD) | ACACTAcATATtGTGT |
| gatCTATATATAGTGc | |
| ACACTATATATtGgag | |
| H.ducreyi | |
| NrdAB | AaACcATATcTtGTac |
| cCACaAcATATAGTGg | |
| HD0394 (nrdGD*) | ACACaATATATtGTGT |
| taACTATATATAGTaa | |
| P.multocida | |
| NrdA-X-nrdB | gCACatTATcTtGTaT |
| ACACaATATcTtGTGT | |
| NrdDG | ACACTATATcTtGTGg |
| taACTATATATAGTaT | |
| A.actinomycetemcomitans | |
| 001_0856 (nrdAB) | ACACatTATcTtGTGc |
| caACTATATgTtGTGT | |
| 001_0126 (nrdDG) | ACACTAcATcTtGTGT |
| tatCTATATATAGTaT | |
| 001_1156 (nrdAB*) | cCACTAgATgTtGTGg |
| V.cholerae | |
| VC1256 (nrdAB) | cCcCTAcATATAGTGT |
| ACACTATATgTAGgGc | |
| VCA0511 (nrdDG) | cCACaAcATATAGTGT |
| gCcCTATATAgtGTaT | |
| V.vulnificus | |
| VV13041 (nrdAB) | cCcCTATATgTtGTGT |
| ctACaATATgTAGata | |
| VV20337 (nrdDG) | cCACaATATATAGTGc |
| ACcCTATATAgtGTGT | |
| V.parahaemolyticus | |
| VP1934 (nrdAB) | cCcCTATATgTtGTGT |
| ctACaATATATAGata | |
| VPA0941 (nrdDG) | cCACaATATATtGTGT |
| ACcCcATATAgtGTGT | |
| S.oneidensis | |
| NrdDG | tgcCTAcATATtGTGT |
| tCACTATATgTAGTGT | |
| DnaA | ACACcAcAagatGTGg |
| ACACTAcATATAGTag | |
| NrdAB | cCtCacTATcTtGTaT |
| ACACcATATcTtGTGT | |
| P.aeruginosa | |
| NrdAB | ACACTAcATATtGTGg |
| gCgCatTATcTtGTaT | |
| cCcCTATATcTtGgGT | |
| PA1920 (nrdDG*) | cCACaAcATATtGTtg |
| ACACatcATgTtGTGg | |
| TopA | cCACTATATATAGcGg |
| PA5497 (nrdJ*) | ACACaAgATATtGatT |
| taACTAgATgTtGcGT | |
| P.putida | |
| NrdA | cCgCatTATcTtGTaT |
| cCACTAgATATAGgGg | |
| NrdB | ACACcATATgatGTGc |
| gCACaAcATATAGgtT | |
| TopA | cCACTATATATAGcGg |
| P.fluorescens | |
| 001_2194 (topA) | cCACTATATATAGcGT |
| 001_6650 (nrdA) | ACgCatTATcTtGTag |
| ACcCTAcATgTAGgGT | |
| 001_3892 (nrdB) | ACcgcAcATcTtGTGc |
| ACACcccATATAGTGT | |
| P.syringae | |
| NrdA | ACgCatTATcTtGTag |
| ACcCTAcATgTAGgGT | |
| NrdB | tCACTATATgctGcGc |
| ACACTAcATAagGgaT | |
| TopA | cCACTATATATAGcGT |
| L.pneumophila | |
| 604_0029 (nrdAB) | ACACatTATcTtGTta |
| ACcCTATATATtGgGT | |
| Microbulbifer degradans | |
| 041_0323 (nrdAB) | cCgCatTATcTtGTaT |
| cCcCcATATATgGTGT | |
| cCACTATATATAGTGg | |
| 042_0347 (nrdB2) | cacCTATATATAGTGg |
| caACcAcATATAGTta | |
| Acidithiobacillus ferrooxidans | |
| 001_0608(nrdA) | gCACaAgATgTAGTtg |
| AgtCTATATtTAGTaT | |
| Dichelobacter nodosus | |
| 012_0189 (nrdBA*) | ACACaATATATAGTGT |
| AtACatgATgatGTGT | |
| 012_0431 (nrdGD*) | ACACaATATcTAGcGT |
| cCACTgTATATAGTaa | |
| Coxiella burnetii | |
| NrdAB | ACACatTATcTtGTGT |
| tgcCTATATATtGTGg | |
| Colwellia psychrerythraea | |
| 001_1964 (nrdAB) | cCtCacTATcTtGTGT |
| ACcCTAgATATtGTGc | |
| 001_3534 (nrdGD*) | tCACTATATATtGatc |
| ACACTATATATtGTGc | |
| AtACTATATATtGTGc | |
| catCTATATATAGgtg | |
| Xylella fastidiosa | |
| XF1196 (nrdAB) | tCACagcATtTtGTGT |
| cCcCatTATcTtGTGg | |
| Xanthomonas axonopodis | |
| NrdAB | ttcCTAcATtTgGTGT |
| cCcCacTATcTtGgGg | |
| Acinetobacter sp. | |
| NrdAB | ttcCcgTATcTtGTGc |
| cCACTAagTcTtGTGT | |
| Beta-Proteobacteria | |
| N.europaea | |
| NrdAB | ACACaATATATtGTGT |
| Neisseria meningitidis | |
| NMB1291 (nrdA-XX-nrdB) | AtcCacTATATtGTcT |
| M.flagelatus | |
| RMFL01743 (nrdJ) | tCACTATATgTtGTGg |
| RMFL01657 (&nrdAB) | gaACaATATATAGTGT |
| R.solanacearum | |
| NrdAB | cCACTATActTAGTGc |
| ACACTAgATATAGTGg | |
| NrdDG* | cCACaAcATcTAGTGc |
| cCACTATATggAGTac | |
| B.pertussis, B.bronchseptica | |
| NrdAB | tCACTAgAatTAGTGc |
| ACACTAcATcTtGTGg | |
| B.avium | |
| 001_4223 (nrdAB) | tCACTAgAatTAGTGc |
| ACACTATATATtGTGT | |
| B.fungorum | |
| 095_0075 (nrdAB) | cCACTATActTgGTGc |
| gCACTAcATcTtGTGT | |
| B.cepacia | |
| 001_6720 (nrdAB) | cCACTATActTgGTGc |
| gtACTAgATATAGTGT | |
| B.pseudomallei | |
| 001_6457 (nrdAB) | cCACTATActTtGgGc |
| gCACTAcATATAGTGT | |
| 001_5114 (nrdDG) | AtACaAcATcTgGTaT |
| tCACcAgATtTtGTGc | |
| Dechloromonas aromatica | |
| 006_0209 (nrdJ) | ACACcgcATATAGTca |
| gCACTATATcTAGTag | |
| Alpha-Proteobacteria | |
| B.melitensis | |
| BMEII0932 (&nrdHIEF) | ctACcATATcTtGTGT |
| BMEI0943 (nrdJ) | gCACaATATcTAGcGT |
| ACACaAgATtTAGTaT | |
| ttACaAgATAagGTaT | |
| M.loti | |
| mll0136 (nrdJ) | ACACaAgATgTtGgGg |
| AtACTATATtTAGTGT | |
| ACgCTAgATAgtGTGa | |
| A.tumefaciens | |
| AGR_C_3183 (nrdJ) | ACACaATATcTtGTGg |
| ACACTATATATAGTag | |
| ACACgAgATAcAGgGa | |
| AGR_C_102 (&nrdHIEF) | AtACTATATgTgGTGT |
| R.leguminosarum | |
| 001_3104 (nrdJ) | cCACaAcATgTtGTGg |
| AtACTATATtTAGTGT | |
| cCACaAgATAcAGgaa | |
| 001_6799 (&nrdHIEF) | cCACaAcAacTtGTtg |
| gtACcATATcTAGTGT | |
| S.meliloti | |
| SMc01237 (nrdJ) | ACACaAgATATAGcGc |
| AtACTATATtTAGTGT | |
| tCACaAgATAcAGgaT | |
| B.japonicum | |
| NrdJ | cCACcATATtTAGTaT |
| gCACTAgtTcTtGacg | |
| Bll0003 (nrdAB*) | cttCTATATgTgGTGT |
| ttcgcATATATgGTGg | |
| R.palustris | |
| NrdJ | cCACcAcATtTAGTaT |
| R.capsulatus | |
| RRC04385 (nrdJ) | cCACaAgATATgGgGg |
| ctACcAgATATAGTGg | |
| RRC03796 (nrdJ2) | cCACaATATAgAGTGc |
| C.crescentus | |
| CC0260(nrdB) | tCACaAcATcTtGTGg |
| CC3492(nrdA) | gCcCcATATtTgGgtT |
| cCACaAgATATAGcGg | |
| Hyphomonas neptunium | |
| 003_0282 (nrdA) | ACACTATATcTtGTGT |
| AgACcAcATcTgGTtT | |
| 005_0697 (nrdB) | gCACTATATgTgGTGT |
| Ehrlichia chaffeensis | |
| 001_0281 (nrdA) | tttCTATATATtGTGc |
| AtACaATATgTAtgcg | |
| Neorickettsia sennetsu | |
| 001_0535 (nrdA) | cCACTATAaATAtgGT |
| ctACTATATATAGacT | |
| Delta-Proteobacteria | |
| G.sulfurreducens | |
| 382170 (nrdJ) | ACcaTATATATtGTGg |
| ACACaAcATATAtgGT | |
| G.metallireducens | |
| 379426 (nrdJ) | gCcaTAcATATtGTGg |
| cCACaAcATATAtgGc | |
| D.acetoxidans | |
| 390414 (parA1) | ACcCTATATgTAGgGT |
| taACaATATcTtGgGg | |
| 392036 (parA2) | gCcCaAgATcTtGTGg |
| AgACTATATcTtGaag | |
| 387205 (nrdDG2) | tCACcAgATgTtGTGg |
| tgtCTATATgTtGTGT | |
| 387094 (nrdJ) | ACACgATATATtGTGT |
| ACACTccATgTgGTac | |
| D.psychrophila | |
| 425342 (nrdJ) | ACcCTAgATATttTtg |
| cCcCTgcgTATgGTGT | |
| DP0064 (nrdDG) | ACACaAcActTAGTag |
| AtACcATATATgaTGg | |
| DP0278 (dnaA) | AaAgTAcATATtGTtc |
| cCtCTAgATgTAGgtg | |
| Bdellovibrio bacteriovorans | |
| NrdAB | cCACTAgATATAGTGg |
| NrdGD* | AtcCTATATcTAGTGg |
| Bacteriovorax marinus | |
| 001_1291 (nrdBA) | ACACaATATATAGgGa |
| Myxococcus xanthus | |
| 050_0270 (nrdAB) | gCACTAgATcTcGcGT |
| cCcCcATAgcTtGTGg | |
| 018_0162 (dnaA) | ACACaATtcATgGTGg |
| ACACcATtTgctGTaT | |
| Chlamydia | |
| C.muridarum | |
| TC0214 (nrdAB) | cttCTATATATgGTaT |
| tCACaATATcTtGgGT | |
| C.pneumoniae | |
| NrdAB | ttcCTATATATgGTag |
| tCACTAcATATtGgGT | |
| C.trachomatis | |
| NrdAB | cttCTATATATgGTaT |
| tCACaATATcTtGgGT | |
| Chlamydophila abortus | |
| 001_0601 (nrdAB) | ttcCTATATATgGTaT |
| tCACTAcATATtGgGT | |
| Chlamydophila caviae | |
| NrdAB | ttcCTATATATgGTaT |
| tCACTAcATATtGgGT | |
| Chloroflexus aurantiacus | |
| RCAU04899 (nrd) | ACACTAgATATAGTaT |
| Treponema denticola | |
| TDE1330 (nrdR-nrdD*) | ACgCTATATATAGTGT |
| Fusobacterium nucleatum | |
| FN0101 (nrdHAB) | ACACTATATATtGTGT |
| ACACaATATATgGaaa | |
| FN0311 (nrdDG) | taACaATATATAGTGg |
| AtACTATATATtGTta | |
| Pirellula sp. | |
| RB12761 (nrdJ) | cgcCcAcATgTAGTGc |
| cCACTAccggTAGTGa | |
| Synechocystis sp. | |
| NrdA | gtgCcAgATgTgGaGT |
| ACACcATATcTgtgGc | |
| cCcCTAaATATtGgca | |
| Nrd-regulon. | |
| S. coelicolor | |
| &nrdXLM | ACACaACATcTgGgGG |
| gCACaAgATGTAtgct | |
| SC4H2.25 (nrdR-nrdJ) | tCcCcACATcTAGTGG |
| agcCcACAaGTtGTGG | |
| S. avermitilis | |
| SAV2462 (nrdR-nrdJ) | gCcCcACATcTAGTGG |
| agcCcACAaGTtGTGG | |
| &nrdXLM | aCACaAgATGTgGgGG |
| gCACaAgATGTAtgct | |
| S. scabies | |
| 1602_0009 (nrdR-nrdJ) | gCcCTACATGTAGTGc |
| agcCcAgAaGTtGTGG | |
| 1720_0013 (nrdXLM) | aCACaACATGTgGgGG |
| gCACTAgATGTAtgct | |
| Propionibacterium acnes | |
| PPA1025 (nrdR-nrdJ) | atACcAgATGTtGTGG |
| tCcCTAtAaGTtGTGt | |
| &PPA2137 (nrdDG) | gCACcAgATGTAGgGG |
| aCcCTttATcTtGTGc | |
| &PPA2121 (nrdAB) | gCcCTtCATaTAGTGa |
| Clavibacter michiganensis | |
| 009_3246 (nrdLM) | CCACaACATGTgGTGG |
| CCcCgACATaTAGTGG | |
| CCACTAtATGTcGgGG | |
| Leifsonia xyli | |
| NrdAB | CCACTAgATGTgGgGG |
| CCcCgctATaTAGTGG | |
| Tropheryma whipplei | |
| NrdAB | aCACTAtATaTcGTGt |
| aCACgAtATaTAGTaG | |
| Bifidobacterium longum | |
| NrdHIEF | aCcCTAtATcTAGgtt |
| CCACTACATaTAGTGc | |
| NrdDG | gCACTAgATaTAGgGG |
| aCcCTAtAaaTAGTtc | |
| Thermobifida fusca | |
| 041_0052 (nrdR-nrdJ) | cCACTAgATcTAGTGc |
| CatCcACAaaTtGTGG | |
| 061_0155 (nrdAB) | CacCatCATGTtGTGG |
| CCACTAgATGatGTGG | |
| C.diphteriae | |
| DIP0465 (nrdDG) | CCACTACATaTtGatt |
| CaACTAtATcTtGTaG | |
| DIP1869 (nrdHIE) | CCtCaACATGTAGgGG |
| atACTAgATaTtGTGc | |
| CCACaAagTaTAGTGt | |
| C.efficiens | |
| CE2363 (nrdDG) | tCACTAgATGTAGTGG |
| NrdHIE | gCgCaACATGTgGgGG |
| CtACTAtATGTAGTGc | |
| CCACaAagTaTAGTGt | |
| C.glutamicum | |
| Cgl2480 (nrdHIE) | tCgCTACATGTgGTGG |
| CtACTAtATGTAGTGc | |
| CCACaAagTaTAGTGt | |
| M.bovis | |
| NrdF2 | aCACaACtTcTtGTGt |
| aCcCcAgggGTAGTGt | |
| NrdHIE | CCcCTAggTGTAGTGt |
| tCAgaACATcTtGTat | |
| M.tuberculosis | |
| MT3133 (nrdF2) | aCACaACtTcTtGTGt |
| aCcCcAgggGTAGTGt | |
| MT3139 (nrdHIE) | CCcCTAggTGTAGTGt |
| tCAgaACATcTtGTat | |
| M.avium | |
| NrdF | aCACaACtTcTtGTGt |
| aCcCcAgggGTAGTGt | |
| NrdHIE | CCACTAggTGTAGTGt |
| tCAgaACATcTtGTat | |
| M.leprae | |
| NrdF | aCACTACtTcTtGTGt |
| aCcCcAaggGTAGTGt | |
| NrdHIE | CCACTAggTGTAGTGt |
| tCAgaACATcTtGTat | |
| M.marinum | |
| 013_0784 (nrdF) | aCACaACtTcTtGTGt |
| CCcCTACggGTAGTGt | |
| 013_0793 (nrdHIE) | CCcCTAggTGTAGTGt |
| tCcgaACATcTtGTat | |
| Symbiobacterium thermophilum | |
| STH322 (nrdAB) | atgCcgtATGTAGTGt |
| aCACTAtATaTtGgGG | |
| STH2761 (nrdR-nrdJ) | aCcCcACATaTgGTGG |
| tCACTAgATaTgGgGG | |
| New_profile (TM_PMI) | |
| P.miotherma | |
| RPMI01590 | AtACAATATAcaGTGg |
| gCACAATAaATTGaGT | |
| RPMI01771 | tttCAATATATTGTcg |
| gtACAATATATTGatT | |
| T.maritime | |
| TM0118 | ctACcAcATgTTGaaT |
| ACACAATATgTTGTtT | |
| TM0384 | caACAATtTtTTGaGa |
| cCACAATATATTGTGg | |
| New profile (Thermus/Deinococcus) | |
| Thermus thermophilus | |
| &TTP0160 (&achX-nrdBA*) | tATcCaACCtGTGGTAgG |
| TTC1930 (nrdJ) | aAccCaACCGGTaGTAgc |
| Deinococcus radiodurans | |
| DR1775 (uvrD) | gcTACCACCGcTGGgATc |
| DR2374 (nrdJ) | CATACCAtCccTGGTATG |
| DRB0106 (&achX-nrdIEF) | agTgCCACCtGTaGTATc |
| New profile (Cyanobacteria) | |
| Pro0815 | ACACTGTCaATgGTGg |
| gCgCTAgCGATgGcGT | |
| NrdJ | gCACTGTCGATgGTGT |
| ACACcATgagTgGcGg | |
| Gloeobacter violaceus | |
| Gll3966 (nrdJ) | gatCTAcCcATgGTGT |
| cCACaGTCGgCAGTtg | |
| Synechococcus sp. | |
| NrdJ | ACACTGcCaATgGTGg |
| cCcCcATCtgTgGcGT | |
| S.elongates | |
| 135_0043 | ACtCcATCccTAGTGT |
| Thermosynechococcus elongates | |
| Tll1327 (nrdJ) | ACACTAcaccTAGTaT |