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Таблица NrdR-2 к примеру 1а статьи К.Ю. Горбунова и В.А. Любецкого
«Реконструкция предковых регуляторных сигналов вдоль дерева эволюции
фактора транскрипции»
Nrd-regulon. |
|
Gamma-Proteobacteria |
|
E.coli |
|
NrdAB |
tCACacTATcTtGcag |
|
cCcCTATATATAGTGT |
NrdHIEF |
ttgCTATATATtGTGT |
|
caACTAcATcTAGTaT |
NrdDG |
gCACTATATATAGacT |
|
ACcCaATATgTtGTaT |
S.typhi |
|
NrdAB |
ACtCaccATATAGcGT |
|
cCcCTATATATAGTaT |
NrdHIEF |
ttcCcATATcTtGTaT |
|
caACTAcATcTAGTaT |
NrdDG |
tCACTAcATATAGacT |
|
ACcCaATATgTtGTaT |
K.pneumoniae |
|
103_0209
(nrdAB) |
ACtCaccATATAGcGT |
|
cCcCTAcATATAGTaT |
123_0082
(nrdHIEF) |
ACgCTATATATtGaGT |
|
taACTAcATcTAGTaT |
121_0512
(nrdDG) |
tCACTAcATATAGaac |
|
gCcCaAcATATtGTaT |
|
tCACcATATcTtGTcg |
Y.pestis |
|
NrdAB |
ACtCacTATcTtGTta |
|
cCACTATATATtGTGT |
NrdHIEF |
taACTAcATgTAGTGT |
|
gCACTAcATATAGTaT |
NrdDG |
tacCcATATATAGTGT |
|
catCTATATgTAGTag |
Y.enterocolitica |
|
RYE01840
(nrdAB) |
ACtCacTATcTtGTta |
|
cCcCTATATATtGTGT |
RYE01342
(nrdHIEF) |
ACACTAgATATAGTaT |
|
taACTAcATATgGTGT |
RYE00867
(nrdDG) |
tacCcATATATAGTGT |
|
tacCTATATgTAGTag |
E.chrysanthemi |
|
001_3356
(nrdAB) |
tCACatTATcTtGTta |
|
cCcCTATATATAGTGT |
001_0534
(nrdHIEF) |
cttCTATATATtGcGT |
|
ACACaATATcTAGTaT |
001_2422
(nrdDG) |
AttCaATATATAGTGT |
|
AacCTAcATATtGTGT |
E.carotovora |
|
NrdAB |
ACtCaccATgTAGTag |
|
cacCTATATcTAGTaT |
NrdHIEF |
AtcaTATATcTtGTGT |
|
tatCTAcATcTAGTaT |
NrdDG |
tttCaATATATAGTGc |
|
tacCTAcATATAGTGT |
Photorhabdus
luminescens |
|
NrdAB |
taACatTATcTtGTtg |
|
cCcCTAcATATtGTGT |
NrdHIEF |
ACACcATATATAGTGc |
|
tCACTAcATATAGTaT |
NrdDG |
ttACTATATATtGTGT |
|
AgACTATATATAGcaa |
H.influenzae |
|
HI1659
(nrdAB) |
ACACatTATcTtGTGg |
|
ACACTATATcTtGTGT |
HI0075
(nrdD) |
ACACTAcATATtGTGT |
|
gatCTATATATAGTGc |
|
ACACTATATATtGgag |
H.ducreyi |
|
NrdAB |
AaACcATATcTtGTac |
|
cCACaAcATATAGTGg |
HD0394
(nrdGD*) |
ACACaATATATtGTGT |
|
taACTATATATAGTaa |
P.multocida |
|
NrdA-X-nrdB |
gCACatTATcTtGTaT |
|
ACACaATATcTtGTGT |
NrdDG |
ACACTATATcTtGTGg |
|
taACTATATATAGTaT |
A.actinomycetemcomitans |
|
001_0856
(nrdAB) |
ACACatTATcTtGTGc |
|
caACTATATgTtGTGT |
001_0126
(nrdDG) |
ACACTAcATcTtGTGT |
|
tatCTATATATAGTaT |
001_1156
(nrdAB*) |
cCACTAgATgTtGTGg |
V.cholerae |
|
VC1256
(nrdAB) |
cCcCTAcATATAGTGT |
|
ACACTATATgTAGgGc |
VCA0511
(nrdDG) |
cCACaAcATATAGTGT |
|
gCcCTATATAgtGTaT |
V.vulnificus |
|
VV13041
(nrdAB) |
cCcCTATATgTtGTGT |
|
ctACaATATgTAGata |
VV20337
(nrdDG) |
cCACaATATATAGTGc |
|
ACcCTATATAgtGTGT |
V.parahaemolyticus |
|
VP1934
(nrdAB) |
cCcCTATATgTtGTGT |
|
ctACaATATATAGata |
VPA0941
(nrdDG) |
cCACaATATATtGTGT |
|
ACcCcATATAgtGTGT |
S.oneidensis |
|
NrdDG |
tgcCTAcATATtGTGT |
|
tCACTATATgTAGTGT |
DnaA |
ACACcAcAagatGTGg |
|
ACACTAcATATAGTag |
NrdAB |
cCtCacTATcTtGTaT |
|
ACACcATATcTtGTGT |
P.aeruginosa |
|
NrdAB |
ACACTAcATATtGTGg |
|
gCgCatTATcTtGTaT |
|
cCcCTATATcTtGgGT |
PA1920
(nrdDG*) |
cCACaAcATATtGTtg |
|
ACACatcATgTtGTGg |
TopA |
cCACTATATATAGcGg |
PA5497
(nrdJ*) |
ACACaAgATATtGatT |
|
taACTAgATgTtGcGT |
P.putida |
|
NrdA |
cCgCatTATcTtGTaT |
|
cCACTAgATATAGgGg |
NrdB |
ACACcATATgatGTGc |
|
gCACaAcATATAGgtT |
TopA |
cCACTATATATAGcGg |
P.fluorescens |
|
001_2194
(topA) |
cCACTATATATAGcGT |
001_6650
(nrdA) |
ACgCatTATcTtGTag |
|
ACcCTAcATgTAGgGT |
001_3892
(nrdB) |
ACcgcAcATcTtGTGc |
|
ACACcccATATAGTGT |
P.syringae |
|
NrdA |
ACgCatTATcTtGTag |
|
ACcCTAcATgTAGgGT |
NrdB |
tCACTATATgctGcGc |
|
ACACTAcATAagGgaT |
TopA |
cCACTATATATAGcGT |
L.pneumophila |
|
604_0029
(nrdAB) |
ACACatTATcTtGTta |
|
ACcCTATATATtGgGT |
Microbulbifer
degradans |
|
041_0323
(nrdAB) |
cCgCatTATcTtGTaT |
|
cCcCcATATATgGTGT |
|
cCACTATATATAGTGg |
042_0347
(nrdB2) |
cacCTATATATAGTGg |
|
caACcAcATATAGTta |
Acidithiobacillus
ferrooxidans |
|
001_0608(nrdA) |
gCACaAgATgTAGTtg |
|
AgtCTATATtTAGTaT |
Dichelobacter
nodosus |
|
012_0189
(nrdBA*) |
ACACaATATATAGTGT |
|
AtACatgATgatGTGT |
012_0431
(nrdGD*) |
ACACaATATcTAGcGT |
|
cCACTgTATATAGTaa |
Coxiella
burnetii |
|
NrdAB |
ACACatTATcTtGTGT |
|
tgcCTATATATtGTGg |
Colwellia
psychrerythraea |
|
001_1964
(nrdAB) |
cCtCacTATcTtGTGT |
|
ACcCTAgATATtGTGc |
001_3534
(nrdGD*) |
tCACTATATATtGatc |
|
ACACTATATATtGTGc |
|
AtACTATATATtGTGc |
|
catCTATATATAGgtg |
Xylella
fastidiosa |
|
XF1196
(nrdAB) |
tCACagcATtTtGTGT |
|
cCcCatTATcTtGTGg |
Xanthomonas
axonopodis |
|
NrdAB |
ttcCTAcATtTgGTGT |
|
cCcCacTATcTtGgGg |
Acinetobacter
sp. |
|
NrdAB |
ttcCcgTATcTtGTGc |
|
cCACTAagTcTtGTGT |
Beta-Proteobacteria |
|
N.europaea |
|
NrdAB |
ACACaATATATtGTGT |
Neisseria
meningitidis |
|
NMB1291
(nrdA-XX-nrdB) |
AtcCacTATATtGTcT |
M.flagelatus |
|
RMFL01743
(nrdJ) |
tCACTATATgTtGTGg |
RMFL01657
(&nrdAB) |
gaACaATATATAGTGT |
R.solanacearum |
|
NrdAB |
cCACTATActTAGTGc |
|
ACACTAgATATAGTGg |
NrdDG* |
cCACaAcATcTAGTGc |
|
cCACTATATggAGTac |
B.pertussis,
B.bronchseptica |
|
NrdAB |
tCACTAgAatTAGTGc |
|
ACACTAcATcTtGTGg |
B.avium |
|
001_4223
(nrdAB) |
tCACTAgAatTAGTGc |
|
ACACTATATATtGTGT |
B.fungorum |
|
095_0075
(nrdAB) |
cCACTATActTgGTGc |
|
gCACTAcATcTtGTGT |
B.cepacia |
|
001_6720
(nrdAB) |
cCACTATActTgGTGc |
|
gtACTAgATATAGTGT |
B.pseudomallei |
|
001_6457
(nrdAB) |
cCACTATActTtGgGc |
|
gCACTAcATATAGTGT |
001_5114
(nrdDG) |
AtACaAcATcTgGTaT |
|
tCACcAgATtTtGTGc |
Dechloromonas
aromatica |
|
006_0209
(nrdJ) |
ACACcgcATATAGTca |
|
gCACTATATcTAGTag |
Alpha-Proteobacteria |
|
B.melitensis |
|
BMEII0932
(&nrdHIEF) |
ctACcATATcTtGTGT |
BMEI0943
(nrdJ) |
gCACaATATcTAGcGT |
|
ACACaAgATtTAGTaT |
|
ttACaAgATAagGTaT |
M.loti |
|
mll0136
(nrdJ) |
ACACaAgATgTtGgGg |
|
AtACTATATtTAGTGT |
|
ACgCTAgATAgtGTGa |
A.tumefaciens |
|
AGR_C_3183
(nrdJ) |
ACACaATATcTtGTGg |
|
ACACTATATATAGTag |
|
ACACgAgATAcAGgGa |
AGR_C_102
(&nrdHIEF) |
AtACTATATgTgGTGT |
R.leguminosarum |
|
001_3104
(nrdJ) |
cCACaAcATgTtGTGg |
|
AtACTATATtTAGTGT |
|
cCACaAgATAcAGgaa |
001_6799
(&nrdHIEF) |
cCACaAcAacTtGTtg |
|
gtACcATATcTAGTGT |
S.meliloti |
|
SMc01237
(nrdJ) |
ACACaAgATATAGcGc |
|
AtACTATATtTAGTGT |
|
tCACaAgATAcAGgaT |
B.japonicum |
|
NrdJ |
cCACcATATtTAGTaT |
|
gCACTAgtTcTtGacg |
Bll0003
(nrdAB*) |
cttCTATATgTgGTGT |
|
ttcgcATATATgGTGg |
R.palustris |
|
NrdJ |
cCACcAcATtTAGTaT |
R.capsulatus |
|
RRC04385
(nrdJ) |
cCACaAgATATgGgGg |
|
ctACcAgATATAGTGg |
RRC03796
(nrdJ2) |
cCACaATATAgAGTGc |
C.crescentus |
|
CC0260(nrdB) |
tCACaAcATcTtGTGg |
CC3492(nrdA) |
gCcCcATATtTgGgtT |
|
cCACaAgATATAGcGg |
Hyphomonas
neptunium |
|
003_0282
(nrdA) |
ACACTATATcTtGTGT |
|
AgACcAcATcTgGTtT |
005_0697
(nrdB) |
gCACTATATgTgGTGT |
Ehrlichia
chaffeensis |
|
001_0281
(nrdA) |
tttCTATATATtGTGc |
|
AtACaATATgTAtgcg |
Neorickettsia
sennetsu |
|
001_0535
(nrdA) |
cCACTATAaATAtgGT |
|
ctACTATATATAGacT |
Delta-Proteobacteria |
|
G.sulfurreducens |
|
382170
(nrdJ) |
ACcaTATATATtGTGg |
|
ACACaAcATATAtgGT |
G.metallireducens |
|
379426
(nrdJ) |
gCcaTAcATATtGTGg |
|
cCACaAcATATAtgGc |
D.acetoxidans |
|
390414
(parA1) |
ACcCTATATgTAGgGT |
|
taACaATATcTtGgGg |
392036
(parA2) |
gCcCaAgATcTtGTGg |
|
AgACTATATcTtGaag |
387205
(nrdDG2) |
tCACcAgATgTtGTGg |
|
tgtCTATATgTtGTGT |
387094
(nrdJ) |
ACACgATATATtGTGT |
|
ACACTccATgTgGTac |
D.psychrophila |
|
425342
(nrdJ) |
ACcCTAgATATttTtg |
|
cCcCTgcgTATgGTGT |
DP0064
(nrdDG) |
ACACaAcActTAGTag |
|
AtACcATATATgaTGg |
DP0278
(dnaA) |
AaAgTAcATATtGTtc |
|
cCtCTAgATgTAGgtg |
Bdellovibrio
bacteriovorans |
|
NrdAB
|
cCACTAgATATAGTGg |
NrdGD* |
AtcCTATATcTAGTGg |
Bacteriovorax
marinus |
|
001_1291
(nrdBA) |
ACACaATATATAGgGa |
Myxococcus
xanthus |
|
050_0270
(nrdAB) |
gCACTAgATcTcGcGT |
|
cCcCcATAgcTtGTGg |
018_0162
(dnaA) |
ACACaATtcATgGTGg |
|
ACACcATtTgctGTaT |
Chlamydia |
|
C.muridarum |
|
TC0214
(nrdAB) |
cttCTATATATgGTaT |
|
tCACaATATcTtGgGT |
C.pneumoniae |
|
NrdAB |
ttcCTATATATgGTag |
|
tCACTAcATATtGgGT |
C.trachomatis |
|
NrdAB |
cttCTATATATgGTaT |
|
tCACaATATcTtGgGT |
Chlamydophila
abortus |
|
001_0601
(nrdAB) |
ttcCTATATATgGTaT |
|
tCACTAcATATtGgGT |
Chlamydophila
caviae |
|
NrdAB |
ttcCTATATATgGTaT |
|
tCACTAcATATtGgGT |
|
|
Chloroflexus
aurantiacus |
|
RCAU04899
(nrd) |
ACACTAgATATAGTaT |
|
|
Treponema
denticola |
|
TDE1330
(nrdR-nrdD*) |
ACgCTATATATAGTGT |
|
|
Fusobacterium
nucleatum |
|
FN0101
(nrdHAB) |
ACACTATATATtGTGT |
|
ACACaATATATgGaaa |
FN0311
(nrdDG) |
taACaATATATAGTGg |
|
AtACTATATATtGTta |
|
|
Pirellula
sp. |
|
RB12761
(nrdJ) |
cgcCcAcATgTAGTGc |
|
cCACTAccggTAGTGa |
|
|
Synechocystis
sp. |
|
NrdA |
gtgCcAgATgTgGaGT |
|
ACACcATATcTgtgGc |
|
cCcCTAaATATtGgca |
|
|
Nrd-regulon. |
|
S. coelicolor |
|
&nrdXLM
|
ACACaACATcTgGgGG |
|
gCACaAgATGTAtgct |
SC4H2.25
(nrdR-nrdJ) |
tCcCcACATcTAGTGG |
|
agcCcACAaGTtGTGG |
S. avermitilis |
|
SAV2462
(nrdR-nrdJ) |
gCcCcACATcTAGTGG |
|
agcCcACAaGTtGTGG |
&nrdXLM
|
aCACaAgATGTgGgGG |
|
gCACaAgATGTAtgct |
S. scabies |
|
1602_0009
(nrdR-nrdJ) |
gCcCTACATGTAGTGc |
|
agcCcAgAaGTtGTGG |
1720_0013
(nrdXLM) |
aCACaACATGTgGgGG |
|
gCACTAgATGTAtgct |
Propionibacterium acnes |
|
PPA1025
(nrdR-nrdJ) |
atACcAgATGTtGTGG |
|
tCcCTAtAaGTtGTGt |
&PPA2137
(nrdDG) |
gCACcAgATGTAGgGG |
|
aCcCTttATcTtGTGc |
&PPA2121
(nrdAB) |
gCcCTtCATaTAGTGa |
Clavibacter michiganensis |
|
009_3246
(nrdLM) |
CCACaACATGTgGTGG |
|
CCcCgACATaTAGTGG |
|
CCACTAtATGTcGgGG |
Leifsonia xyli |
|
NrdAB
|
CCACTAgATGTgGgGG |
|
CCcCgctATaTAGTGG |
Tropheryma whipplei |
|
NrdAB |
aCACTAtATaTcGTGt |
|
aCACgAtATaTAGTaG |
Bifidobacterium longum |
|
NrdHIEF |
aCcCTAtATcTAGgtt |
|
CCACTACATaTAGTGc |
NrdDG
|
gCACTAgATaTAGgGG |
|
aCcCTAtAaaTAGTtc |
Thermobifida fusca |
|
041_0052
(nrdR-nrdJ) |
cCACTAgATcTAGTGc |
|
CatCcACAaaTtGTGG |
061_0155
(nrdAB) |
CacCatCATGTtGTGG |
|
CCACTAgATGatGTGG |
C.diphteriae |
|
DIP0465
(nrdDG) |
CCACTACATaTtGatt |
|
CaACTAtATcTtGTaG |
DIP1869
(nrdHIE) |
CCtCaACATGTAGgGG |
|
atACTAgATaTtGTGc |
|
CCACaAagTaTAGTGt |
C.efficiens |
|
CE2363
(nrdDG) |
tCACTAgATGTAGTGG |
NrdHIE
|
gCgCaACATGTgGgGG |
|
CtACTAtATGTAGTGc |
|
CCACaAagTaTAGTGt |
C.glutamicum |
|
Cgl2480
(nrdHIE) |
tCgCTACATGTgGTGG |
|
CtACTAtATGTAGTGc |
|
CCACaAagTaTAGTGt |
M.bovis |
|
NrdF2
|
aCACaACtTcTtGTGt |
|
aCcCcAgggGTAGTGt |
NrdHIE
|
CCcCTAggTGTAGTGt |
|
tCAgaACATcTtGTat |
M.tuberculosis |
|
MT3133
(nrdF2) |
aCACaACtTcTtGTGt |
|
aCcCcAgggGTAGTGt |
MT3139
(nrdHIE) |
CCcCTAggTGTAGTGt |
|
tCAgaACATcTtGTat |
M.avium |
|
NrdF
|
aCACaACtTcTtGTGt |
|
aCcCcAgggGTAGTGt |
NrdHIE |
CCACTAggTGTAGTGt |
|
tCAgaACATcTtGTat |
M.leprae |
|
NrdF
|
aCACTACtTcTtGTGt |
|
aCcCcAaggGTAGTGt |
NrdHIE
|
CCACTAggTGTAGTGt |
|
tCAgaACATcTtGTat |
M.marinum |
|
013_0784
(nrdF) |
aCACaACtTcTtGTGt |
|
CCcCTACggGTAGTGt |
013_0793
(nrdHIE) |
CCcCTAggTGTAGTGt |
|
tCcgaACATcTtGTat |
Symbiobacterium thermophilum |
|
STH322
(nrdAB) |
atgCcgtATGTAGTGt |
|
aCACTAtATaTtGgGG |
STH2761
(nrdR-nrdJ) |
aCcCcACATaTgGTGG |
|
tCACTAgATaTgGgGG |
|
|
|
|
New_profile (TM_PMI) |
|
P.miotherma |
|
RPMI01590
|
AtACAATATAcaGTGg |
|
gCACAATAaATTGaGT |
RPMI01771
|
tttCAATATATTGTcg |
|
gtACAATATATTGatT |
T.maritime |
|
TM0118
|
ctACcAcATgTTGaaT |
|
ACACAATATgTTGTtT |
TM0384
|
caACAATtTtTTGaGa |
|
cCACAATATATTGTGg |
|
|
New profile (Thermus/Deinococcus) |
|
Thermus thermophilus |
|
&TTP0160
(&achX-nrdBA*) |
tATcCaACCtGTGGTAgG |
TTC1930
(nrdJ) |
aAccCaACCGGTaGTAgc |
Deinococcus radiodurans |
|
DR1775
(uvrD) |
gcTACCACCGcTGGgATc |
DR2374
(nrdJ) |
CATACCAtCccTGGTATG |
DRB0106
(&achX-nrdIEF) |
agTgCCACCtGTaGTATc |
|
|
New profile (Cyanobacteria) |
|
|
Pro0815
|
ACACTGTCaATgGTGg |
|
gCgCTAgCGATgGcGT |
|
NrdJ
|
gCACTGTCGATgGTGT |
|
ACACcATgagTgGcGg |
Gloeobacter violaceus |
|
Gll3966
(nrdJ) |
gatCTAcCcATgGTGT |
|
cCACaGTCGgCAGTtg |
Synechococcus sp. |
|
NrdJ
|
ACACTGcCaATgGTGg |
|
cCcCcATCtgTgGcGT |
S.elongates |
|
135_0043
|
ACtCcATCccTAGTGT |
|
|
Thermosynechococcus elongates |
|
Tll1327
(nrdJ) |
ACACTAcaccTAGTaT |
|
|
Nrd-regulon. |
|
S.aureus |
|
NrdIEF |
ACACataATATAGTGT |
|
ACACaATATcTtGTGT |
|
AtACTAcATATAGTGa |
NrdDG |
AtACTATATATAGTGg |
|
ACACaATATATAGgaa |
S.epidermidis |
|
SE0512
(nrdIEF) |
ACACagaATATAGTaT |
|
ACACTATATATAGTGT |
|
cCACTATATATtGTGg |
SE2172
(nrdDG) |
AtACTATATATAGTaT |
|
ACACTATATATAGcGa |
L.monocytogenes |
|
Lmo2155
(nrdAB) |
gtACTATATcTtGcaT |
|
AtACTATATATAGTaT |
Lmo0279
(nrdDG) |
AaACTtcATcTtGTGT |
|
ACACaATATATAGTta |
B.subtilis |
|
YmaA
(nrdIEF) |
AatCTATATATtGTGT |
|
AtACTATATATAGTGT |
YvdC
|
catCTATATATcGTGT |
|
ACACTATATATtGTcc |
B.licheniformis |
|
NrdIEF
|
gCACaATATATtGTGT |
|
AtACTATATATtGTGT |
BL05350
(yvdC) |
ACtCcATATATtGata |
|
gtACTATATATtGTtT |
B.halodurans |
|
&nrdAB
|
AtACaATATATAGaGT |
|
ttACaATATcTAGTGT |
BH2810
(nrdJ) |
AatCaATATATAGTaT |
|
AtACTATATATtGaaT |
B.cereus |
|
BC1353
(nrdIEF) |
tacaTATATcTtGTGT |
|
AtACaATATATAGaGa |
BC5047
(yvdC) |
AaACTATATATtGTta |
|
gtACaAcATATtGaGg |
BC3603
(nrdDG) |
AgACTATATgTAGTaa |
|
taACaAcATATtGgtg |
B.stearothermophilus |
|
274_0021
(nrdJ) |
taACaATATATAGTaT |
|
AtACTATATATtGTtT |
232_0012
(&nrdAB) |
AtACTATATATtGgtT |
|
caACTAcATATcGTtc |
O.iheyensis |
|
OB3089
(nrdA-frd-nrdB) |
AtACaAgATATAGaaa |
|
AtACTATATATtGTGT |
L.lactis |
|
NucA
|
ACACaATATATtGTGT |
|
AtACTATATATAGgtT |
NrdDG
|
ACACaAgATATtGTGT |
|
AacCTATATATtGTGT |
NdrHIEF
|
gCACaATATgTtGTGT |
|
ACACaATATcTAGTaT |
S.pyogenes |
|
NrdF1-nrdI-nrdE1
|
ACACTATATcTtGTGT |
|
AaACTATATcTtGTca |
NrdHEF2 |
ACACaATATgTtGTGT |
|
ACACaATATtTAGgtT |
NrdD-XXX-nrdG |
ACACaATATATtGatT |
|
tatCaATATATtGTGT |
S.agalactiae |
|
NrdH-nrdE2-nrdF2 |
ACACTATATATtGTGT |
|
AaACgAaATATAGTGT |
NrdF1-nrdI-nrdE1
|
ACACaAgATATAGTGg |
|
ACACaAaActTtGTGT |
NrdD-XXX-nrdG
|
AatCaATATATtGTGT |
|
ACACaATATATtGatT |
S.pneumoniae |
|
SP1178
(nrdHEF) |
ACACTATATATtGTGT |
|
cCACTATATtTAGTtc |
SP0202
(nrdD-XXX-nrdG) |
AatCaATATcTtGTGT |
|
ACACaAgATATtGatT |
S.mutans |
|
SMU.669c
(nrdHEF) |
ACACTATATcTtGTGg |
|
gtACTATATtTtGTGT |
NrdD-XX-nrdG
|
cCACaATATATtGatT |
|
tatCaATATATtGTGT |
S.uberis |
|
037_0033
(nrdHEF) |
ACACaATATATAGTGa |
|
cCcCaAaATATtGTGT |
050_0094
(nrdD-XX-nrdG) |
AatCaATATATtGTGT |
|
ACACaAgATATtGatT |
047_0142
(nrdI) |
ttACaAgATATAGTaT |
|
caACTATATcTtGTGg |
S.mitis |
|
192_0006
(nrdHEF) |
ACACTAcATATtGTGT |
|
cCACTATATtTAGTtT |
203_0024
(nrdD-XX-nrdG) |
AatCaATATcTtGTGT |
|
ACACaAgATATtGatT |
S.zooepidemicus |
|
043_0005
(nrdFIE) |
gCACTATATATtGTGT |
|
AatCTATATATtGTaT |
049_0004
(nrdD-XX-nrdG) |
AatCaATATATtGTGT |
|
ACACaATATATtGatT |
013_0002
(nrdHEF2) |
cCACaATATcTtGTGc |
|
ACACaATATtTAGaaa |
S.equi |
|
037_0003
(nrdFIE) |
gCACTATATATtGTGT |
|
AatCTATATATtGTaT |
039_0023
(nrdD-XX-nrdG) |
AatCaATATATtGTGT |
|
ACACaATATATtGatT |
039_0136
(nrdHEF2) |
cCACaATATcTtGTGc |
|
ACACaATATtTAGaaa |
S.gordonii |
|
049_0690
(nrdHEF) |
ACACcATATcTtGTaT |
|
ACACaATATtTAGTcT |
050_0639
(nrdD-XX-nrdG) |
ACACaAgATATtGatT |
|
tatCaATATcTtGTGT |
S.thermophilus |
|
001_0052
(nrdHEF) |
ACACaAgATATAGgGT |
|
ACACaAaATATtGTaT |
046_0006
(nrdD-XX-nrdG) |
AatCaATATATAGTGg |
|
cCACaATATATtGatT |
050_0005
(nrdI) |
ACACaAcATcTtGTGT |
|
ACACaAgATATAGata |
C.acetobutylicum |
|
CAC1047(nrdJ) |
AtACaATATATAGTGT |
|
cCACTATATATAGTtT |
CAC1195
(ligA) |
AaACTATATATtGTGT |
|
AtACTATATATAGTGc |
CAC0480
(nrdDG) |
gtACaAgATATAGTGT |
|
AtgCTAaATgTAGTaa |
CAC3277
(nrdAB) |
AagCgATATATtGTGg |
|
AtACTAcATATtGTGg |
C.tetani |
|
CTC00574
(nrdJ) |
AtACTATATATtGTaT |
|
AtACcATATATgcTta |
CTC00257
(nrdDG) |
AtACaATATATtGTag |
|
AtgCTATATgTtGTaa |
C.perfringens |
|
NrdAB
|
tgtCaAgATATtGTGc |
|
ttACTATATATtGTGg |
NrdD
|
taACTATtaATAGTag |
|
gtACaAgATATAGTGg |
|
AtgCTAcATgTtGTGa |
C.botulinum |
|
001_2081
(nrdAB) |
AtACaATATATAGTGa |
|
AtACaATATATAGaGT |
001_0072
(nrdDG) |
ACACaATATgTtGTag |
|
AtgCTATATgTtGTGa |
C.difficile |
|
001_0079
(nrdDG) |
AtACTAcATATAGTGg |
|
AtACaATATATAGTaa |
001_2429
(nrdAB) |
AtACTATATgTAGTaT |
|
tgACTATATgTAGTGc |
T.tengcongensis |
|
NrdJ
|
ACACaAcAaAatGTaT |
|
AtACaAaATATtGTGT |
NrdD-pflA
|
AtACTAaATATtGaGg |
|
ctACTATATtTtGTGT |
|
001_0545
(nrdR-nrdDG) |
ACACaAgATATAGTag |
|
ACACaAaATATAGgGT |
E.faecalis |
|
NrdHIEF
|
ACACaAcATtTAGTGT |
|
ACACaAaAacTAGTaT |
|
cCACaATATATAGTGT |
NrdDG
|
gCACaATATATAGTGT |
|
ACgCaATATATcGatT |
EF0739-EF0740
(pnuC-dgk) |
taACTATATgTAGTGT |
|
AatCaATATATAGTaT |
E.faecium |
|
008_0044
(pnuC) |
AtACaATAgATtGTGT |
|
ACACTAcATtTAGTGT |
021_0015
(tr-r-ndt-dgk) |
AtACTATATATAGTGg |
|
ctACaAaATcTAGTcT |
020_0004
(nrdHIEF) |
ACACaATATgTAGTGT |
|
AtACTATcTATtaTag |
028_0005
(nrdDG) |
ACACTAcATATAGTaT |
|
AtACTATATATAGccg |
L.plantarum |
|
Lp_0259
(pnuC) |
AtACaATATATtGTGT |
|
ACACTAcATgTAGTag |
NrdDG
|
ctACTATATATAGTaT |
|
gCACTATcaATtGTaT |
Dgk2
|
AaAgTcTATATgGTaT |
|
AtACaATATATtGTGc |
Dgk1
|
tCACcAgATATtGcaT |
|
gtACaATATgTAGTGT |
NrdHEF
|
ACACaAcATcTAGgGc |
|
ACcCTAgATgTtGTGT |
L.delbrueckii |
|
041_0007
(nrdJ) |
ACACagTtTcTcGTGT |
|
ACACTAcATcTtGTGT |
113_0001
(dgk1-dgk2) |
gCACTATATcTtGcaa |
|
AacgTAgATcTAGTaT |
018_0001
(nrdDG) |
cCACaATATcTgGTaT |
|
AaACaAgATgTAGTGg |
|
cCACaAgATAgtcTag |
L.johnsonii |
|
LJ0643
(pnuC) |
AtACTAgATAcAGatg |
|
gCACaATATATtGTGT |
LJ1824-LJ1825
(dgk1-dgk2) |
ctACcAgATATtGaaT |
|
AaACTATATATtGTag |
LJ0137
(nrdDG) |
AtACaATATATAtgaT |
|
ctACaATATcatGTag |
|
ACcaTAgATATtGTGa |
L.acidophilus R26 |
|
Dgk1-dgk2 |
AtACcAgATATtGaaT |
|
ACtaTATATgTAGaaa |
L.gasseri |
|
050_0030
(nrdJ) |
taACaATcTATAGTGc |
|
AtACTAgATATtGTGT |
|
cgACaAgATATtGTac |
031_0003
(dgk1-dgk2) |
AtACcAgATATtGaaT |
|
AaACTATATcTtGTag |
054_0013
(nrdDG) |
AtACaATATATAtgtT |
|
ctACaATATcatGTag |
|
ACcaTAcATATtGTGa |
067_0052
(pnuC) |
AtACTAgATAaAGatg |
|
gCACaATATATtGTGT |
L.casei |
|
NrdD |
ACACacTATATAGTGT |
|
cCACaAaATtTAGTGg |
NrdG |
cgtCaAgATATAGatg |
|
AtACTAcATcTtGgGg |
NrdJ |
AatCTATATcTtGata |
|
AtACcATATcTtGTaT |
P.pentosaceus |
|
RPPE00300-nrdDG |
AtACTATATATtGTaT |
|
cacaTAgATgTtGTGT |
RPPE01423
(nrdHEF) |
gCACaATATATAGTGg |
|
cCtCTAcATATtGTGc |
RPPE01639
(dgk) |
AtACaATATgTtGTGg |
Desulfitobacterium halfniense |
|
3286_0001
(nrdR-nrdJ) |
AtACTAcATATgGTGT |
|
ACACTATATATgGgGg |
3245_0014
(nrdDG) |
cCcCTATATATAGTGT |
|
catCTATATATgGTGT |
|
|
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|