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05/12/21
14:43:17

Лаборатория математических методов и моделей в биоинформатике
Института проблем передачи информации им. А.А. Харкевича
Российской академии наук

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Эволюция NtcA- и NtcB-регулонов у цианобактерий и хлоропластов Rhodophyta

Дополнительные материалы к статье «Регулоны NtcA и NtcB у цианобактерий и хлоропластов Rhodophyta» (Лопатовская К.В., Селиверстов А.В., Любецкий В.А.)

Литература

  1. Alfonso M., Perewoska I., Kirilovsky D. 2001. Redox control of ntcА gene expression in Synechocystis sp. PCC 6803. Nitrogen availability and electron transport regulate the levels of the NtcA protein. Plant Physiol. 125, 969-981.
  2. Frias J.E., Flores E., Herrero A. 2000. Activation of the Anabaena nir operon promoter requires both NtcA (CAP family) and NtcB (LysR family) transcription factors. Mol. Microbiol. 38(3), 613-625.
  3. Muro-Pastor M.I., Florencio F.J. 2003. Regulation of ammonium assimilation in cyanobacteria. Plant Physiol. Biochem. 41, 595-603.
  4. Bird C., Wyman M. 2003. Nitrate/nitrite assimilation system of the marine picoplanktonic cyanobacterium Synechococcus sp. strain WH 8103: effect of nitrogen source and availability on gene expression. Appl. Env. Microbiol. 69(12), 7009-7018.
  5. Aldehni M.F., Forchhammer K. 2006. Analysis of a non-canonical NtcA-dependent promoter in Synechococcus elongatus and its regulation by NtcA and PII. Arch. Microbiol. 184, 378-386.
  6. Garcia-Dominguez M., Reyes J.C., Florencio F.J. 2000. NtcA represses transcription of gifA and gifB, genes that encode inhibitors of glutamine synthetase type I from Synechocystis sp. PCC 6803. Mol. Microbiol. 35(5), 1192-1201.
  7. Maeda S.-I., Kawaguchi Y., Ohe T.-A., Omata T. 1998. cis-Acting sequences required for NtcB-dependent, nitrite-responsive positive regulation of the nitrate assimilation operon in the cyanobacterium Synechococcus sp. strain PCC 7942. J. Bacteriol. 180(16), 4080-4088.
  8. Su Z., Olman V., Mao F., Xu Y. 2005. Comparative genomics analysis of NtcA regulons in cyanobacteria: regulation of nitrogen assimilation and its coupling to photosynthesis. Nucl. Acids Res. 33(16), 5156-5171.
  9. Forchhammer K. 2008. PII signal transducers: novel functional and structural insights. Trends Microbiol. 16(2), 65–72.
  10. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. 1997. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882.
  11. Интернет-сайт http://lab6.iitp.ru/en/twobox/
  12. Интернет-сайт http://lab6.iitp.ru/en/treeal/
  13. Lyubetsky V.A., Rubanov L.I., Seliverstov A.V. 2010. Lack of conservation of bacterial type promoters in plastids of Streptophyta. Biology Direct. 5(34), 1-32.
  14. Kumar S., Dudley J., Nei M., Tamura K. 2008. MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings in Bioinformatics. 9, 299-306.
  15. Crooks G.E., Hon G., Chandonia J.M, Brenner S.E. 2004. WebLogo: A sequence logo generator. Genome Research. 14, 1188-1190.
  16. Lyubetsky V.A., Zvekov O.A., Rubanov L.I., Seliverstov A.V. Modeling RNA-polymerase competition: the effect of σ-subunit knockout and temperature on gene transcription level. Biology Direct – in press.
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