Laboratory of Mathematic methods and models in bioinformatics,
Institute for Information Transmission Problems,
Russian Academy of Sciences

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Evolution Model of Regulatory Signal with Secondary Structure

Conceptual description of the model is provided in detail in the paper [1] and briefly in Section 6 of Readme file. The model (version 1.0.7) has been implemented as a command line utility for 32-bit Windows environment.

Read Me

Distribution download (3 MB)

Detailed results of the examples from the paper [1]

Example 1 (classical attenuation regulation of threonine biosynthesis in gamma-proteobacteria):

• Tree and species names
• HTML output

Example 2 (classical attenuation regulation of leucine biosynthesis in gamma-proteobacteria):

• Tree and species names
• HTML output

Example 3 (similar to Example 1, but with leader peptide genes):

• Tree and species names
• HTML output
• Text log

[1] V.A. Lyubetsky, E.A. Zhizhina, L.I. Rubanov. Gibbs field approach for evolutionary analysis of regulatory signal of gene expression // Problems of Information Transmission (Problemy Peredachi Informatsii), 2008, Vol. 44, No. 4, pp. 333-351.