Main Software Products Developed by the Laboratory

• Anneal: Evolution model of regulatory signal with secondary structure
• ChromoGGL: Construction of the shortest sequence of chromosomal rearrangements and reconstruction of chromosomal structures
• embed3GL: Phylogenetic study of joint evolution of species and genes
• iHCE: Identification of highly conserved elements in the set of genomes
• lossgainRSL: Prediction of gene losses and gains between several groups of species
• ProtFile: Protein search by phylogenetic profile
• ProtClust: Database of proteins encoded in plastids
• RepIns: Search for direct repeats insertions in non-coding regions
• Rivals / cpRivals: Modeling of RNA polymerase competition
• RNAmodel: Model of RNA-related regulation in bacteria
• Super3GL / Basis3GL: Building of phylogenetic supertree
• TIQMax: Analysis of the evolution of a set of protein families and construction of a species tree
• TwoBox: Finding of multi-box regulatory signal in a set of unaligned sequences