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Таблица NrdR-1 к примеру 1 статьи К.Ю. Горбунова и В.А. Любецкого «Реконструкция предковых регуляторных сигналов вдоль дерева эволюции фактора транскрипции»
| Nrd-regulon. | |
| Gamma-Proteobacteria | |
| E.coli | |
| NrdAB | tCACacTATcTtGcag |
| cCcCTATATATAGTGT | |
| NrdHIEF | ttgCTATATATtGTGT |
| caACTAcATcTAGTaT | |
| NrdDG | gCACTATATATAGacT |
| ACcCaATATgTtGTaT | |
| S.typhi | |
| NrdAB | ACtCaccATATAGcGT |
| cCcCTATATATAGTaT | |
| NrdHIEF | ttcCcATATcTtGTaT |
| caACTAcATcTAGTaT | |
| NrdDG | tCACTAcATATAGacT |
| ACcCaATATgTtGTaT | |
| K.pneumoniae | |
| 103_0209 (nrdAB) | ACtCaccATATAGcGT |
| cCcCTAcATATAGTaT | |
| 123_0082 (nrdHIEF) | ACgCTATATATtGaGT |
| taACTAcATcTAGTaT | |
| 121_0512 (nrdDG) | tCACTAcATATAGaac |
| gCcCaAcATATtGTaT | |
| tCACcATATcTtGTcg | |
| Y.pestis | |
| NrdAB | ACtCacTATcTtGTta |
| cCACTATATATtGTGT | |
| NrdHIEF | taACTAcATgTAGTGT |
| gCACTAcATATAGTaT | |
| NrdDG | tacCcATATATAGTGT |
| catCTATATgTAGTag | |
| Y.enterocolitica | |
| RYE01840 (nrdAB) | ACtCacTATcTtGTta |
| cCcCTATATATtGTGT | |
| RYE01342 (nrdHIEF) | ACACTAgATATAGTaT |
| taACTAcATATgGTGT | |
| RYE00867 (nrdDG) | tacCcATATATAGTGT |
| tacCTATATgTAGTag | |
| E.chrysanthemi | |
| 001_3356 (nrdAB) | tCACatTATcTtGTta |
| cCcCTATATATAGTGT | |
| 001_0534 (nrdHIEF) | cttCTATATATtGcGT |
| ACACaATATcTAGTaT | |
| 001_2422 (nrdDG) | AttCaATATATAGTGT |
| AacCTAcATATtGTGT | |
| E.carotovora | |
| NrdAB | ACtCaccATgTAGTag |
| cacCTATATcTAGTaT | |
| NrdHIEF | AtcaTATATcTtGTGT |
| tatCTAcATcTAGTaT | |
| NrdDG | tttCaATATATAGTGc |
| tacCTAcATATAGTGT | |
| Photorhabdus luminescens | |
| NrdAB | taACatTATcTtGTtg |
| cCcCTAcATATtGTGT | |
| NrdHIEF | ACACcATATATAGTGc |
| tCACTAcATATAGTaT | |
| NrdDG | ttACTATATATtGTGT |
| AgACTATATATAGcaa | |
| H.influenzae | |
| HI1659 (nrdAB) | ACACatTATcTtGTGg |
| ACACTATATcTtGTGT | |
| HI0075 (nrdD) | ACACTAcATATtGTGT |
| gatCTATATATAGTGc | |
| ACACTATATATtGgag | |
| H.ducreyi | |
| NrdAB | AaACcATATcTtGTac |
| cCACaAcATATAGTGg | |
| HD0394 (nrdGD*) | ACACaATATATtGTGT |
| taACTATATATAGTaa | |
| P.multocida | |
| NrdA-X-nrdB | gCACatTATcTtGTaT |
| ACACaATATcTtGTGT | |
| NrdDG | ACACTATATcTtGTGg |
| taACTATATATAGTaT | |
| V.cholerae | |
| VC1256 (nrdAB) | cCcCTAcATATAGTGT |
| ACACTATATgTAGgGc | |
| VCA0511 (nrdDG) | cCACaAcATATAGTGT |
| gCcCTATATAgtGTaT | |
| V.vulnificus | |
| VV13041 (nrdAB) | cCcCTATATgTtGTGT |
| ctACaATATgTAGata | |
| VV20337 (nrdDG) | cCACaATATATAGTGc |
| ACcCTATATAgtGTGT | |
| V.parahaemolyticus | |
| VP1934 (nrdAB) | cCcCTATATgTtGTGT |
| ctACaATATATAGata | |
| VPA0941 (nrdDG) | cCACaATATATtGTGT |
| ACcCcATATAgtGTGT | |
| P.aeruginosa | |
| NrdAB | ACACTAcATATtGTGg |
| gCgCatTATcTtGTaT | |
| cCcCTATATcTtGgGT | |
| PA1920 (nrdDG*) | cCACaAcATATtGTtg |
| ACACatcATgTtGTGg | |
| TopA | cCACTATATATAGcGg |
| PA5497 (nrdJ*) | ACACaAgATATtGatT |
| taACTAgATgTtGcGT | |
| P.putida | |
| NrdA | cCgCatTATcTtGTaT |
| cCACTAgATATAGgGg | |
| NrdB | ACACcATATgatGTGc |
| gCACaAcATATAGgtT | |
| TopA | cCACTATATATAGcGg |
| P.fluorescens | |
| 001_2194 (topA) | cCACTATATATAGcGT |
| 001_6650 (nrdA) | ACgCatTATcTtGTag |
| ACcCTAcATgTAGgGT | |
| 001_3892 (nrdB) | ACcgcAcATcTtGTGc |
| ACACcccATATAGTGT | |
| P.syringae | |
| NrdA | ACgCatTATcTtGTag |
| ACcCTAcATgTAGgGT | |
| NrdB | tCACTATATgctGcGc |
| ACACTAcATAagGgaT | |
| TopA | cCACTATATATAGcGT |
| Xylella fastidiosa | |
| XF1196 (nrdAB) | tCACagcATtTtGTGT |
| cCcCatTATcTtGTGg | |
| Xanthomonas axonopodis | |
| NrdAB | ttcCTAcATtTgGTGT |
| cCcCacTATcTtGgGg | |
| Beta-Proteobacteria | |
| N.europaea | |
| NrdAB | ACACaATATATtGTGT |
| Neisseria meningitidis | |
| NMB1291 (nrdA-XX-nrdB) | AtcCacTATATtGTcT |
| M.flagelatus | |
| RMFL01743 (nrdJ) | tCACTATATgTtGTGg |
| RMFL01657 (&nrdAB) | gaACaATATATAGTGT |
| R.solanacearum | |
| NrdAB | cCACTATActTAGTGc |
| ACACTAgATATAGTGg | |
| NrdDG* | cCACaAcATcTAGTGc |
| cCACTATATggAGTac | |
| B.pertussis, B.bronchseptica | |
| NrdAB | tCACTAgAatTAGTGc |
| ACACTAcATcTtGTGg | |
| B.avium | |
| 001_4223 (nrdAB) | tCACTAgAatTAGTGc |
| ACACTATATATtGTGT | |
| B.fungorum | |
| 095_0075 (nrdAB) | cCACTATActTgGTGc |
| gCACTAcATcTtGTGT | |
| B.cepacia | |
| 001_6720 (nrdAB) | cCACTATActTgGTGc |
| gtACTAgATATAGTGT | |
| B.pseudomallei | |
| 001_6457 (nrdAB) | cCACTATActTtGgGc |
| gCACTAcATATAGTGT | |
| 001_5114 (nrdDG) | AtACaAcATcTgGTaT |
| tCACcAgATtTtGTGc | |
| Dechloromonas aromatica | |
| 006_0209 (nrdJ) | ACACcgcATATAGTca |
| gCACTATATcTAGTag | |
| Alpha-Proteobacteria | |
| B.melitensis | |
| BMEII0932 (&nrdHIEF) | ctACcATATcTtGTGT |
| BMEI0943 (nrdJ) | gCACaATATcTAGcGT |
| ACACaAgATtTAGTaT | |
| ttACaAgATAagGTaT | |
| M.loti | |
| mll0136 (nrdJ) | ACACaAgATgTtGgGg |
| AtACTATATtTAGTGT | |
| ACgCTAgATAgtGTGa | |
| A.tumefaciens | |
| AGR_C_3183 (nrdJ) | ACACaATATcTtGTGg |
| ACACTATATATAGTag | |
| ACACgAgATAcAGgGa | |
| AGR_C_102 (&nrdHIEF) | AtACTATATgTgGTGT |
| R.leguminosarum | |
| 001_3104 (nrdJ) | cCACaAcATgTtGTGg |
| AtACTATATtTAGTGT | |
| cCACaAgATAcAGgaa | |
| 001_6799 (&nrdHIEF) | cCACaAcAacTtGTtg |
| gtACcATATcTAGTGT | |
| S.meliloti | |
| SMc01237 (nrdJ) | ACACaAgATATAGcGc |
| AtACTATATtTAGTGT | |
| tCACaAgATAcAGgaT | |
| B.japonicum | |
| NrdJ | cCACcATATtTAGTaT |
| gCACTAgtTcTtGacg | |
| Bll0003 (nrdAB*) | cttCTATATgTgGTGT |
| ttcgcATATATgGTGg | |
| R.palustris | |
| NrdJ | cCACcAcATtTAGTaT |
| R.capsulatus | |
| RRC04385 (nrdJ) | cCACaAgATATgGgGg |
| ctACcAgATATAGTGg | |
| RRC03796 (nrdJ2) | cCACaATATAgAGTGc |
| C.crescentus | |
| CC0260(nrdB) | tCACaAcATcTtGTGg |
| CC3492(nrdA) | gCcCcATATtTgGgtT |
| cCACaAgATATAGcGg | |
| Hyphomonas neptunium | |
| 003_0282 (nrdA) | ACACTATATcTtGTGT |
| AgACcAcATcTgGTtT | |
| 005_0697 (nrdB) | gCACTATATgTgGTGT |
| Ehrlichia chaffeensis | |
| 001_0281 (nrdA) | tttCTATATATtGTGc |
| AtACaATATgTAtgcg | |
| Neorickettsia sennetsu | |
| 001_0535 (nrdA) | cCACTATAaATAtgGT |
| ctACTATATATAGacT | |
| Delta-Proteobacteria | |
| G.sulfurreducens | |
| 382170 (nrdJ) | ACcaTATATATtGTGg |
| ACACaAcATATAtgGT | |
| G.metallireducens | |
| 379426 (nrdJ) | gCcaTAcATATtGTGg |
| cCACaAcATATAtgGc | |
| D.acetoxidans | |
| 390414 (parA1) | ACcCTATATgTAGgGT |
| taACaATATcTtGgGg | |
| 392036 (parA2) | gCcCaAgATcTtGTGg |
| AgACTATATcTtGaag | |
| 387205 (nrdDG2) | tCACcAgATgTtGTGg |
| tgtCTATATgTtGTGT | |
| 387094 (nrdJ) | ACACgATATATtGTGT |
| ACACTccATgTgGTac | |
| D.psychrophila | |
| 425342 (nrdJ) | ACcCTAgATATttTtg |
| cCcCTgcgTATgGTGT | |
| DP0064 (nrdDG) | ACACaAcActTAGTag |
| AtACcATATATgaTGg | |
| DP0278 (dnaA) | AaAgTAcATATtGTtc |
| cCtCTAgATgTAGgtg | |
| Bdellovibrio bacteriovorans | |
| NrdAB | cCACTAgATATAGTGg |
| NrdGD* | AtcCTATATcTAGTGg |
| Bacteriovorax marinus | |
| 001_1291 (nrdBA) | ACACaATATATAGgGa |
| Myxococcus xanthus | |
| 050_0270 (nrdAB) | gCACTAgATcTcGcGT |
| cCcCcATAgcTtGTGg | |
| 018_0162 (dnaA) | ACACaATtcATgGTGg |
| ACACcATtTgctGTaT | |
| Chlamydia | |
| C.muridarum | |
| TC0214 (nrdAB) | cttCTATATATgGTaT |
| tCACaATATcTtGgGT | |
| C.pneumoniae | |
| NrdAB | ttcCTATATATgGTag |
| tCACTAcATATtGgGT | |
| C.trachomatis | |
| NrdAB | cttCTATATATgGTaT |
| tCACaATATcTtGgGT | |
| Chlamydophila abortus | |
| 001_0601 (nrdAB) | ttcCTATATATgGTaT |
| tCACTAcATATtGgGT | |
| Chlamydophila caviae | |
| NrdAB | ttcCTATATATgGTaT |
| tCACTAcATATtGgGT | |
| Treponema denticola | |
| TDE1330 (nrdR-nrdD*) | ACgCTATATATAGTGT |
| Synechocystis sp. | |
| NrdA | gtgCcAgATgTgGaGT |
| ACACcATATcTgtgGc | |
| cCcCTAaATATtGgca | |
| Nrd-regulon. | |
| S. coelicolor | |
| &nrdXLM | ACACaACATcTgGgGG |
| gCACaAgATGTAtgct | |
| SC4H2.25 (nrdR-nrdJ) | tCcCcACATcTAGTGG |
| agcCcACAaGTtGTGG | |
| S. avermitilis | |
| SAV2462 (nrdR-nrdJ) | gCcCcACATcTAGTGG |
| agcCcACAaGTtGTGG | |
| &nrdXLM | aCACaAgATGTgGgGG |
| gCACaAgATGTAtgct | |
| S. scabies | |
| 1602_0009 (nrdR-nrdJ) | gCcCTACATGTAGTGc |
| agcCcAgAaGTtGTGG | |
| 1720_0013 (nrdXLM) | aCACaACATGTgGgGG |
| gCACTAgATGTAtgct | |
| Propionibacterium acnes | |
| PPA1025 (nrdR-nrdJ) | atACcAgATGTtGTGG |
| tCcCTAtAaGTtGTGt | |
| &PPA2137 (nrdDG) | gCACcAgATGTAGgGG |
| aCcCTttATcTtGTGc | |
| &PPA2121 (nrdAB) | gCcCTtCATaTAGTGa |
| Clavibacter michiganensis | |
| 009_3246 (nrdLM) | CCACaACATGTgGTGG |
| CCcCgACATaTAGTGG | |
| CCACTAtATGTcGgGG | |
| Leifsonia xyli | |
| NrdAB | CCACTAgATGTgGgGG |
| CCcCgctATaTAGTGG | |
| Bifidobacterium longum | |
| NrdHIEF | aCcCTAtATcTAGgtt |
| CCACTACATaTAGTGc | |
| NrdDG | gCACTAgATaTAGgGG |
| aCcCTAtAaaTAGTtc | |
| Thermobifida fusca | |
| 041_0052 (nrdR-nrdJ) | cCACTAgATcTAGTGc |
| CatCcACAaaTtGTGG | |
| 061_0155 (nrdAB) | CacCatCATGTtGTGG |
| CCACTAgATGatGTGG | |
| C.diphteriae | |
| DIP0465 (nrdDG) | CCACTACATaTtGatt |
| CaACTAtATcTtGTaG | |
| DIP1869 (nrdHIE) | CCtCaACATGTAGgGG |
| atACTAgATaTtGTGc | |
| CCACaAagTaTAGTGt | |
| C.efficiens | |
| CE2363 (nrdDG) | tCACTAgATGTAGTGG |
| NrdHIE | gCgCaACATGTgGgGG |
| CtACTAtATGTAGTGc | |
| CCACaAagTaTAGTGt | |
| C.glutamicum | |
| Cgl2480 (nrdHIE) | tCgCTACATGTgGTGG |
| CtACTAtATGTAGTGc | |
| CCACaAagTaTAGTGt | |
| M.bovis | |
| NrdF2 | aCACaACtTcTtGTGt |
| aCcCcAgggGTAGTGt | |
| NrdHIE | CCcCTAggTGTAGTGt |
| tCAgaACATcTtGTat | |
| M.tuberculosis | |
| MT3133 (nrdF2) | aCACaACtTcTtGTGt |
| aCcCcAgggGTAGTGt | |
| MT3139 (nrdHIE) | CCcCTAggTGTAGTGt |
| tCAgaACATcTtGTat | |
| M.avium | |
| NrdF | aCACaACtTcTtGTGt |
| aCcCcAgggGTAGTGt | |
| NrdHIE | CCACTAggTGTAGTGt |
| tCAgaACATcTtGTat | |
| M.leprae | |
| NrdF | aCACTACtTcTtGTGt |
| aCcCcAaggGTAGTGt | |
| NrdHIE | CCACTAggTGTAGTGt |
| tCAgaACATcTtGTat | |
| M.marinum | |
| 013_0784 (nrdF) | aCACaACtTcTtGTGt |
| CCcCTACggGTAGTGt | |
| 013_0793 (nrdHIE) | CCcCTAggTGTAGTGt |
| tCcgaACATcTtGTat | |
| Symbiobacterium thermophilum | |
| STH322 (nrdAB) | atgCcgtATGTAGTGt |
| aCACTAtATaTtGgGG | |
| STH2761 (nrdR-nrdJ) | aCcCcACATaTgGTGG |
| tCACTAgATaTgGgGG | |
| New_profile (TM_PMI) | |
| T.maritime | |
| TM0118 | ctACcAcATgTTGaaT |
| ACACAATATgTTGTtT | |
| TM0384 | caACAATtTtTTGaGa |
| cCACAATATATTGTGg | |
| New profile (Thermus/Deinococcus) | |
| Thermus thermophilus | |
| &TTP0160 (&achX-nrdBA*) | tATcCaACCtGTGGTAgG |
| TTC1930 (nrdJ) | aAccCaACCGGTaGTAgc |
| Deinococcus radiodurans | |
| DR1775 (uvrD) | gcTACCACCGcTGGgATc |
| DR2374 (nrdJ) | CATACCAtCccTGGTATG |
| DRB0106 (&achX-nrdIEF) | agTgCCACCtGTaGTATc |
| New profile (Cyanobacteria) | |
| Pro0815 | ACACTGTCaATgGTGg |
| gCgCTAgCGATgGcGT | |
| NrdJ | gCACTGTCGATgGTGT |
| ACACcATgagTgGcGg | |
| Gloeobacter violaceus | |
| Gll3966 (nrdJ) | gatCTAcCcATgGTGT |
| cCACaGTCGgCAGTtg | |
| Synechococcus sp. | |
| NrdJ | ACACTGcCaATgGTGg |
| cCcCcATCtgTgGcGT | |
| S.elongates | |
| 135_0043 | ACtCcATCccTAGTGT |
| Thermosynechococcus elongates | |
| Tll1327 (nrdJ) | ACACTAcaccTAGTaT |
| Nrd-regulon. | |
| S.aureus | |
| NrdIEF | ACACataATATAGTGT |
| ACACaATATcTtGTGT | |
| AtACTAcATATAGTGa | |
| NrdDG | AtACTATATATAGTGg |
| ACACaATATATAGgaa | |
| S.epidermidis | |
| SE0512 (nrdIEF) | ACACagaATATAGTaT |
| ACACTATATATAGTGT | |
| cCACTATATATtGTGg | |
| SE2172 (nrdDG) | AtACTATATATAGTaT |
| ACACTATATATAGcGa | |
| L.monocytogenes | |
| Lmo2155 (nrdAB) | gtACTATATcTtGcaT |
| AtACTATATATAGTaT | |
| Lmo0279 (nrdDG) | AaACTtcATcTtGTGT |
| ACACaATATATAGTta | |
| B.subtilis | |
| YmaA (nrdIEF) | AatCTATATATtGTGT |
| AtACTATATATAGTGT | |
| YvdC | catCTATATATcGTGT |
| ACACTATATATtGTcc | |
| B.licheniformis | |
| NrdIEF | gCACaATATATtGTGT |
| AtACTATATATtGTGT | |
| BL05350 (yvdC) | ACtCcATATATtGata |
| gtACTATATATtGTtT | |
| B.halodurans | |
| &nrdAB | AtACaATATATAGaGT |
| ttACaATATcTAGTGT | |
| BH2810 (nrdJ) | AatCaATATATAGTaT |
| AtACTATATATtGaaT | |
| B.cereus | |
| BC1353 (nrdIEF) | tacaTATATcTtGTGT |
| AtACaATATATAGaGa | |
| BC5047 (yvdC) | AaACTATATATtGTta |
| gtACaAcATATtGaGg | |
| BC3603 (nrdDG) | AgACTATATgTAGTaa |
| taACaAcATATtGgtg | |
| B.stearothermophilus | |
| 274_0021 (nrdJ) | taACaATATATAGTaT |
| AtACTATATATtGTtT | |
| 232_0012 (&nrdAB) | AtACTATATATtGgtT |
| caACTAcATATcGTtc | |
| L.lactis | |
| NucA | ACACaATATATtGTGT |
| AtACTATATATAGgtT | |
| NrdDG | ACACaAgATATtGTGT |
| AacCTATATATtGTGT | |
| NdrHIEF | gCACaATATgTtGTGT |
| ACACaATATcTAGTaT | |
| S.pyogenes | |
| NrdF1-nrdI-nrdE1 | ACACTATATcTtGTGT |
| AaACTATATcTtGTca | |
| NrdHEF2 | ACACaATATgTtGTGT |
| ACACaATATtTAGgtT | |
| NrdD-XXX-nrdG | ACACaATATATtGatT |
| tatCaATATATtGTGT | |
| S.agalactiae | |
| NrdH-nrdE2-nrdF2 | ACACTATATATtGTGT |
| AaACgAaATATAGTGT | |
| NrdF1-nrdI-nrdE1 | ACACaAgATATAGTGg |
| ACACaAaActTtGTGT | |
| NrdD-XXX-nrdG | AatCaATATATtGTGT |
| ACACaATATATtGatT | |
| S.pneumoniae | |
| SP1178 (nrdHEF) | ACACTATATATtGTGT |
| cCACTATATtTAGTtc | |
| SP0202 (nrdD-XXX-nrdG) | AatCaATATcTtGTGT |
| ACACaAgATATtGatT | |
| S.mutans | |
| SMU.669c (nrdHEF) | ACACTATATcTtGTGg |
| gtACTATATtTtGTGT | |
| NrdD-XX-nrdG | cCACaATATATtGatT |
| tatCaATATATtGTGT | |
| E.faecalis | |
| NrdHIEF | ACACaAcATtTAGTGT |
| ACACaAaAacTAGTaT | |
| cCACaATATATAGTGT | |
| NrdDG | gCACaATATATAGTGT |
| ACgCaATATATcGatT | |
| EF0739-EF0740 (pnuC-dgk) | taACTATATgTAGTGT |
| AatCaATATATAGTaT | |
| E.faecium | |
| 008_0044 (pnuC) | AtACaATAgATtGTGT |
| ACACTAcATtTAGTGT | |
| 021_0015 (tr-r-ndt-dgk) | AtACTATATATAGTGg |
| ctACaAaATcTAGTcT | |
| 020_0004 (nrdHIEF) | ACACaATATgTAGTGT |
| AtACTATcTATtaTag | |
| 028_0005 (nrdDG) | ACACTAcATATAGTaT |
| AtACTATATATAGccg | |
| P.pentosaceus | |
| RPPE00300-nrdDG | AtACTATATATtGTaT |
| cacaTAgATgTtGTGT | |
| RPPE01423 (nrdHEF) | gCACaATATATAGTGg |
| cCtCTAcATATtGTGc | |
| RPPE01639 (dgk) | AtACaATATgTtGTGg |