Example 1 of the Super3GL program use
Download the bunch of Example 1 files: example040.zip
The set of input trees in Example 1 consists of 1000 gene trees (file input_trees.tre). These genes are from 40 species. The trees do not contain the gene names themselves, only species name present. No table of species is provided.
The program configuration file for running in normal mode (both Stages 1 and 2) is super3GL.ini
Command line to run the program on 2 processors in MPICH2 v.1.3.2 environment:
mpiexec -np 2 super3GL
Execution time on two-core CPU Intel Core2 Duo 2.53 GHz - 11 min.
The file of basis trees obtained after Stage 1 - basis.tre
The supertree file obtained after Stage 2 - super3.tre
The execution log - super3GL.log
Download the bunch of Example 1 files: example040.zip