Example 1 of the Super3GL program usage

The set of input trees in Example 1 consists of 1000 gene trees (file input_trees.tre). These genes are from 40 species. The trees do not contain the gene names themselves, only species names are present. No table of species is provided.

• The program configuration file for running in normal mode (both Stages 1 and 2) is super3GL.ini.
• Command line to run the program on 2 processors in MPICH2 v.1.3.2 environment:

  mpiexec -np 2 super3GL

  Execution time on two-core CPU Intel Core2 Duo 2.53 GHz is 11 min.
• The file of basis trees obtained after Stage 1 is basis.tre.
• The supertree file obtained after Stage 2 is super3.tre.
• The execution log is super3GL.log.

Download the bunch of Example 1 files: example040.zip.