Lab.6 IITP RAS logo
13/12/18
02:33:22

Laboratory of Mathematic methods and models in bioinformatics,
Institute for Information Transmission Problems,
Russian Academy of Sciences

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Example 1 of the Super3GL program use

Download the bunch of Example 1 files: example040.zip

The set of input trees in Example 1 consists of 1000 gene trees (file input_trees.tre). These genes are from 40 species. The trees do not contain the gene names themselves, only species name present. No table of species is provided.

The program configuration file for running in normal mode (both Stages 1 and 2) is super3GL.ini

Command line to run the program on 2 processors in MPICH2 v.1.3.2 environment:
mpiexec -np 2 super3GL
Execution time on two-core CPU Intel Core2 Duo 2.53 GHz - 11 min.

The file of basis trees obtained after Stage 1 - basis.tre

The supertree file obtained after Stage 2 - super3.tre

The execution log - super3GL.log

Download the bunch of Example 1 files: example040.zip

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