Example 1 of the Super3GL program usage
The set of input trees in Example 1 consists of 1000 gene trees (file
input_trees.tre
). These genes are from 40 species. The trees do not contain
the gene names themselves, only species names are present. No table of species is provided.
- The program configuration file for running in normal mode (both Stages 1 and 2) is
super3GL.ini
. - Command line to run the program on 2 processors in MPICH2 v.1.3.2 environment:
Execution time on two-core CPU Intel Core2 Duo 2.53 GHz is 11 min.mpiexec -np 2 super3GL
- The file of basis trees obtained after Stage 1 is
basis.tre
. - The supertree file obtained after Stage 2 is
super3.tre
. - The execution log is
super3GL.log
.
Download the bunch of Example 1 files: example040.zip.