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Laboratory of Mathematic methods and models in bioinformatics,
Institute for Information Transmission Problems,
Russian Academy of Sciences

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Publications of Gregory Shilovsky

  1. G.A. Shilovsky, T.S. Putyatina, A.V. Markov, V.P. Skulachev. Contribution of quantitative methods of estimating mortality dynamics to explaining mechanisms of aging. Biochemistry (Moscow), Dec 2015, Vol. 80, Iss. 12, P. 1547–1559.
    DOI: 10.1134/S0006297915120020, WOS000366491000002, Scopus: 2-s2.0-84949550945, PMID26638679, eLIBRARY: 26923207, EDN: WREEHP, ISTINA: 17286721,
  2. G.A. Shilovsky, B.A. Feniouk, V.P. Skulachev. Thymic involution in ontogenesis: Role in aging program. Biochemistry (Moscow), Dec 2015, Vol. 80, Iss. 12, P. 1629–1631.
    DOI: 10.1134/S0006297915120135, WOS000366491000013, Scopus: 2-s2.0-84949544316, PMID26638690, eLIBRARY: 26923121, EDN: WREDAN, ISTINA: 11999528,
  3. G.A. Shilovsky, T.S. Putyatina, S.N. Lysenkov, V.V. Ashapkin, O.S. Luchkina, A.V. Markov, V.P. Skulachev. Is it possible to prove the existence of an aging program by quantitative analysis of mortality dynamics?. Biochemistry (Moscow), Dec 2016, Vol. 81, Iss. 12, P. 1461–1476.
    DOI: 10.1134/S0006297916120075, WOS000390092900007, Scopus: 2-s2.0-85006266092, PMID28259123, eLIBRARY: 29474048, EDN: YUZMQH, ISTINA: 36565732,
  4. G.A. Shilovsky, S.I. Shram, G.V. Morgunova, A.N. Khokhlov. Protein poly(ADP-ribosyl)ation system: Changes in development and aging as well as due to restriction of cell proliferation. Biochemistry (Moscow), Nov 2017, Vol. 82, Iss. 11, P. 1391–1401.
    DOI: 10.1134/S0006297917110177, WOS000415208200017, Scopus: 2-s2.0-85034236760, PMID29223166, eLIBRARY: 31053423, EDN: XNPHDU, ISTINA: 83071581,
  5. G.A. Shilovsky, T.S. Putyatina, V.V. Ashapkin, O.S. Luchkina, A.V. Markov. Coefficient of variation of lifespan across the tree of life: Is it a signature of programmed aging?. Biochemistry (Moscow), Dec 2017, Vol. 82, Iss. 12, P. 1480–1492.
    DOI: 10.1134/S0006297917120070, WOS000418054800007, Scopus: 2-s2.0-85038429930, PMID29486698, eLIBRARY: 35482248, EDN: UXNNSX, ISTINA: 91416102,
  6. G.A. Shilovsky, S.I. Shram, A.N. Khokhlov. Anti-aging medicine and poly(ADP-ribose) polymerases: Activate or inhibit?. Clinical Gerontology, 2017, Vol. 23, No. 9-10, P. 76–78, in Russian.
    eLIBRARY: 29963163
  7. G.A. Shilovsky, T.S. Putyatina, V.V. Ashapkin, O.S. Luchkina, B.F. Vanyushin. New testing methods of medicaments and geroprotectors for people of advanced age. Clinical Gerontology, 2017, Vol. 23, No. 9-10, P. 78–79, in Russian.
    eLIBRARY: 29963164
  8. A.V. Seliverstov, L.I. Rubanov, G.A. Shilovsky, O.A. Zverkov, V.A. Lyubetsky. Longevity in euarchontoglires: lost genes as a determinant. FEBS Open Bio, Jul 5 2018, Vol. 8, Suppl. 1, P. 456–457.
    DOI: 10.1002/2211-5463.12453, WOS000437674105151, ISTINA: 129706313, IITP: 7709. $ RSF 14-50-00150.
  9. G.A. Shilovsky, T.S. Putyatina, V.V. Ashapkin, A.A. Rozina, V.A. Lyubetsky, E.P. Minina, I.B. Bychkovskaia, A.V. Markov, V.P. Skulachev. Ants as object of gerontological research. Biochemistry (Moscow), Dec 2018, Vol. 83, Iss. 12–13, P. 1489–1503.
    DOI: 10.1134/S0006297918120076, WOS000458203500007, Scopus: 2-s2.0-85061233350, PMID30878024, eLIBRARY: 38682353, EDN: XQCTNN, ISTINA: 160476991, IITP: 8131. $ RSF 14-50-00029.
  10. G.A. Shilovsky, V.V. Ashapkin, N.S. Linkova, V.Kh. Khavinson, B.F. Vanyushin. Expression of KLF, PTEN, SUMO1, APOE, SOD2, and SHC1 genes in differently «aged» quiescent cells: a model for testing of some geroprotectors. Clinical Gerontology, 2018, Vol. 24, No. 9–10, P. 80–82, in Russian.
    eLIBRARY: 35418992, IITP: 8148
  11. G.A. Shilovsky, T.S. Putyatina, V.V. Ashapkin, E.P. Minina, V.A. Lyubetsky, B.F. Vanyushin. Anti-aging medicine: requirements for geroprotectors for aged persons. Clinical Gerontology, 2018, Vol. 24, No. 9–10, P. 82–84, in Russian.
    eLIBRARY: 35418993, IITP: 8132
  12. A.V. Seliverstov, G.A. Shilovsky, L.I. Rubanov, O.A. Zverkov, V.A. Lyubetsky. Longevity in mammals: lost genes as a determinant. Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB-2018), The Eleventh International Conference Abstracts, Novosibirsk, Russia, 20–25 August 2018, Novosibirsk: ICG SB RAS, 2018, P. 249.
    DOI: 10.18699/BGRSSB-2018-221, eLIBRARY: 38017206, EDN: KAXHPN, IITP: 7712,
  13. L.I. Rubanov, A.G. Zaraisky, G.A. Shilovsky, A.V. Seliverstov, O.A. Zverkov, V.A. Lyubetsky. Screening for mouse genes lost in mammals with long lifespans. BioData Mining, Nov 9 2019, Vol. 12, Art. 20.
    DOI: 10.1186/s13040-019-0208-x, WOS000495611800001, Scopus: 2-s2.0-85074905309, PMID31728160, PMC6842137, eLIBRARY: 41702928, EDN: DGPULN, ISTINA: 250298357, IITP: 8012. $ RFBR 18-29-13037. ,
  14. G.A. Shilovsky, O.A. Zverkov, A.V. Seliverstov, V.V. Ashapkin, T.S. Putyatina, L.I. Rubanov, V.A. Lyubetsky. New C-terminal conserved regions of tafazzin, a catalyst of cardiolipin remodeling. Oxidative Medicine and Cellular Longevity, Oct 24 2019, Vol. 2019, Art. 2901057, 13 pp.
    DOI: 10.1155/2019/2901057, WOS000501281500001, Scopus: 2-s2.0-85074777423, PMID31781330, PMC6855050, eLIBRARY: 41699870, EDN: MOFLMU, ISTINA: 233651864, IITP: 8008. $ RFBR 18-29-13037.
  15. G.A. Shilovsky, T.S. Putyatina, V.V. Ashapkin, O.V. Yamskova, V.A. Lyubetsky, E.V. Sorokina, S.I. Shram, A.V. Markov, M.Yu. Vyssokikh. Biological diversity and remodeling of cardiolipin in oxidative stress and age-related pathologies. Biochemistry (Moscow), Dec 18 2019, Vol. 84, Iss. 12, P. 1469–1483.
    DOI: 10.1134/S000629791912006X, WOS000511160100006, Scopus: 2-s2.0-85076613431, PMID31870251, eLIBRARY: 43221203, EDN: QOLZYE, ISTINA: 260558708, IITP: 8152. $ RFBR 18-29-13037.
  16. L.I. Rubanov, G.A. Shilovsky, A.V. Seliverstov, O.A. Zverkov, V.A. Lyubetsky. Mouse genes lost in rodent and primate species with long lifespan. The proceedings of International congress «Biotechnology: state of the art and perspectives», Moscow, Russia, February 25–27 2019, Iss. 17, P. 342.
    eLIBRARY: 37590373, EDN: WULUVO, IITP: 8153. $ RFBR 18-29-13037.
  17. No English citation is currently avaliable for this publication.
    Г.А. Шиловский. Поли(ADP-рибозил)ирование белков в культивируемых клетках: влияние «стационарного старения» и различных биологически активных соединений. Автореферат диссертации на соискание учёной степени кандидата биологических наук (03.01.08 – Биоинженерия), Москва, 2019, 26 стр.
    ИППИ: 8156, i,
  18. No English citation is currently avaliable for this publication.
    Г.А. Шиловский. Поли(ADP-рибозил)ирование белков в культивируемых клетках: влияние «стационарного старения» и различных биологически активных соединений. Диссертация на соискание учёной степени кандидата биологических наук (03.01.08 – Биоинженерия), Москва, 2019, 157 стр.
    ИППИ: 8157, i,
  19. L.I. Rubanov, O.A. Zverkov, G.A. Shilovsky, A.V. Seliverstov, V.A. Lyubetsky. Protein-coding genes in Euarchontoglires with pseudogene homologs in humans. Life, Sep 1 2020, Vol. 10, No. 9, Art. 192.
    DOI: 10.3390/life10090192, WOS000580342600001, Scopus: 2-s2.0-85090691850, PMID32927891, PMC7555810, eLIBRARY: 45339570, EDN: LUYXYL, ISTINA: 321982169, IITP: 8128. $ RFBR 18-29-13037.
  20. V.P. Skulachev, G.A. Shilovsky, T.S. Putyatina, N.A. Popov, A.V. Markov, M.V. Skulachev, V.A. Sadovnichii. Perspectives of Homo sapiens lifespan extension: focus on external or internal resources?. Aging, Mar 27 2020, Vol. 12, No. 6, P. 5566–5584.
    DOI: 10.18632/aging.102981, WOS000522733300055, Scopus: 2-s2.0-85083042347, PMID32229707, PMC7138562, eLIBRARY: 43260230, EDN: VSBKTO, ISTINA: 295913012, IITP: 8147. $ RFBR 18-29-13037.
  21. V.V. Ashapkin, V.Kh. Khavinson, G.A. Shilovsky, N.S. Linkova, B.F. Vanyushin. Gene expression in human mesenchymal stem cell aging cultures: modulation by short peptides. Molecular Biology Reports, Jun 2020, Vol. 47, Iss. 6, P. 4323–4329.
    DOI: 10.1007/s11033-020-05506-3, WOS000532458300002, Scopus: 2-s2.0-85084543659, eLIBRARY: 43292566, EDN: ZAZDWX, PMID32399807, ISTINA: 301712488, IITP: 8158,
  22. G.V. Morgunova, G.A. Shilovsky, A.N. Khokhlov. Age-related metabolic disorders: from four models of medicine to cells. Clinical Gerontology, 2020, Vol. 26, No. 9–10, P. 17–20, in Russian.
    DOI: 10.26347/1607-2499202009-10017-020, eLIBRARY: 44010054, EDN: OJMRSY, ISTINA: 321892109, IITP: 8205
  23. G.A. Shilovsky, E.V. Sorokina. Ochratoxin A and induction of the cellular antioxidant / antitoxic system by transcription factor NRF2 (literature review). Problems in Medical Mycology, 2020, Vol. 22, No. 4, P. 3–7, in Russian.
    eLIBRARY: 44577005, EDN: FUJJRJ, ISTINA: 339639633, IITP: 8206. $ RFBR 18-29-13037
  24. V.A. Lyubetsky, G.A. Shilovsky, O.A. Zverkov, A.V. Seliverstov, L.I. Rubanov. New bioinformatics methods for identification of lost genes and protein isoforms. Homo sapiens liberatus, Proceedings of the 3rd International Conference in celebration of the 85th birthday of professor V.P. Skulachev, Moscow, Russia, February 20–21 2020, Abstract Book, Moscow: Torus Press, 2020, P. 41–42.
    DOI: 10.30826/HomoSapiens-2020-30, eLIBRARY: 42660982, EDN: LTRLAG, IITP: 8140. $ RFBR 18-29-13037. i,
  25. G.A. Shilovsky, T.S. Putyatina. Variations in coloration in ants as a characteristic of the direction of natural selection. Homo sapiens liberatus, Proceedings of the 3rd International Conference in celebration of the 85th birthday of professor V.P. Skulachev, Moscow, Russia, February 20–21 2020, Abstract Book, Moscow: Torus Press, 2020, P. 58–59.
    DOI: 10.30826/HomoSapiens-2020-46, eLIBRARY: 42660997, EDN: BJLTUP, i,
  26. V.A. Lyubetsky, G.A. Shilovsky, A.V. Seliverstov, O.A. Zverkov, L.I. Rubanov. Evolution of proteins involved in response to ROS. Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB-2020), The Twelfth International Multiconference Abstracts, Novosibirsk, Russia, 6–10 July 2020, Novosibirsk: ICG SB RAS, 2020, P. 652–653.
    DOI: 10.18699/BGRS/SB-2020-398, eLIBRARY: 44042513, EDN: KXGPZJ, IITP: 8139, i. $ RFBR 18-29-13037.
  27. L.I. Rubanov, G.A. Shilovsky, A.V. Seliverstov, O.A. Zverkov, V.A. Lyubetsky. Gene loss prediction based on genomic structure. The proceedings of International forum «Biotechnology: state of the art and perspectives», Moscow, Russia, October 28–30 2020, Iss. 18, P. 259–260.
    DOI: 10.37747/2312-640X-2020-18-258-260, eLIBRARY: 44374969, EDN: ZKTWOD, IITP: 8177. $ RFBR 18-29-13037.
  28. G.A. Shilovsky, T.S. Putyatina, G.V. Morgunova, A.V. Seliverstov, V.V. Ashapkin, E.V. Sorokina, A.V. Markov, V.P. Skulachev. A crosstalk between the biorhythms and gatekeepers of longevity: Dual role of glycogen synthase kinase-3. Biochemistry (Moscow), Apr 2021, Vol. 86, Iss. 4, P. 433–448.
    DOI: 10.1134/S0006297921040052, WOS000638604500005, Scopus: 2-s2.0-85104085461, PMID33941065, PMC8033555, eLIBRARY: 46109832, EDN: EIQCPV, ISTINA: 365663204, IITP: 8227,
  29. G.A. Shilovsky, T.S. Putyatina, G.V. Morgunova, A.V. Seliverstov, V.V. Ashapkin, E.V. Sorokina, A.V. Markov, V.P. Skulachev. Erratum to: A crosstalk between the biorhythms and gatekeepers of longevity: Dual role of glycogen synthase kinase-3. Biochemistry (Moscow), May 20 2021, Vol. 86, Iss. 5, P. 611.
    DOI: 10.1134/S0006297921050096, WOS000652447100009, Scopus: 2-s2.0-85106578307, eLIBRARY: 46766706, EDN: JBTKAG. $ RFBR 18-29-13037.
  30. G.V. Morgunova, G.A. Shilovsky, A.N. Khokhlov. Effect of caloric restriction on aging: fixing the problems of nutrient sensing in postmitotic cells?. Biochemistry (Moscow), Oct 2021, Vol. 86, Iss. 10, P. 1352–1367.
    DOI: 10.1134/S0006297921100151, WOS000709365700015, Scopus: 2-s2.0-85117622906, PMID34903158, eLIBRARY: 47518469, EDN: QTNWYF, ISTINA: 395416049, IITP: 8309,
  31. G.A. Shilovsky, T.S. Putyatina, A.V. Markov. Altruism and phenoptosis as programs supported by evolution. Biochemistry (Moscow), Dec 2021, Vol. 86, Iss. 12-13, P. 1540–1552.
    DOI: 10.1134/S0006297921120038, WOS000731265300003, Scopus: 2-s2.0-85121454653, PMID34937533, PMC8678581, eLIBRARY: 47546701, EDN: TJPLBS, ISTINA: 417438696, IITP: 8325. $ RFBR 18-29-13037.
  32. A.V. Oleskin, E.V. Sorokina, G.A. Shilovsky. Interaction of catecholamines with microorganisms, neurons, and immune cells. Biology Bulletin Reviews, 2021, Vol. 11, No. 4, P. 358–367.
    DOI: 10.1134/S2079086421040058, ISTINA: 379565522, IITP: 8308,
  33. G.A. Shilovsky, T.S. Putyatina, I.V. Orlovsky. Prospects for the development and application of antioxidant drugs based on glutamyl and metal-binding peptides. Clinical Gerontology, 2021, Vol. 27, No. 1-2, P. 59–63, (in Russian).
    DOI: 10.26347/1607-2499202101-02059-063
  34. G.A. Shilovsky, T.S. Putyatina, I.B. Pavlova, E.V. Sorokina, O.V. Yamskova, V.A. Lyubetsky. Mitochondrial-directed compounds ensuring protection of mitochondrial phospholipid cardiolipine in human age-dependent pathologies. Clinical Gerontology, 2021, Vol. 27, No. 3-4, P. 90–94, (in Russian).
    DOI: 10.26347/1607-2499202103-04090-094
  35. G.A. Shilovsky, E.V. Sorokina, I.V. Orlovsky. Transcription factor NRF2 - a target of potential antioxidant drugs: Prospects in treatment of age-related diseases. Clinical Gerontology, 2021, Vol. 27, No. 11-12, P. 57–62, (in Russian).
    DOI: 10.26347/1607-2499202111-12057-062, ISTINA: 415502077, IITP: 8570
  36. G.A. Shilovsky, O.A. Zverkov, L.I. Rubanov, A.V. Seliverstov, V.A. Lyubetsky. Complex evolution of Fbxl21 gene in mammals. Proceedings of 10th Moscow Conference on Computational Molecular Biology MCCMB'21, Moscow, Russia, July 30 — August 2 2021.
    IITP: 8318. $ RFBR 18-29-13037. i,
  37. G.A. Shilovsky. Lability of the Nrf2/Keap/ARE cell defense system in different models of cell aging and age-related pathologies. Biochemistry (Moscow), Jan 2022, Vol. 87, Iss. 1, P. 70–85.
    DOI: 10.1134/S0006297922010060, PMID35491021, eLIBRARY: 48143407, EDN: FPJXKJ, ISTINA: 437917632, IITP: 8363. $ RFBR 18-29-13037.
  38. G.A. Shilovsky. Variability of mortality: additional information on mortality and morbidity curves under normal and pathological conditions [Commentary on the article by A. G. Malygin “Programmed risks of death in male patients with diabetes” published in Biochemistry (Moscow), vol. 86, pp. 1553-1562 (2021)]. Biochemistry (Moscow), Mar 2022, Vol. 87, Iss. 3, P. 294–299.
    DOI: 10.1134/S0006297922030087, PMID35526855, PMC8916788, eLIBRARY: 48584697, EDN: IYTRNQ, ISTINA: 462372701, IITP: 8406,
  39. G.A. Shilovsky, V.V. Ashapkin. Transcription factor Nrf2 and mitochondria – friends or foes in the regulation of aging rate. Biochemistry (Moscow), 2022, Vol. 87, Iss. 12-13, P. 1477–1486.
    DOI: 10.1134/S0006297922120057, PMID36717441, ISTINA: 521969948, IITP: 8561,
  40. G.A. Shilovsky, T.S. Putyatina, A.V. Markov. Evolution of longevity as a species-specific trait in mammals. Biochemistry (Moscow), 2022, Vol. 87, Iss. 12-13, P. 1579–1599.
    DOI: 10.1134/S0006297922120148, WOS000915846700014, PMID36717448, ISTINA: 526001947, IITP: 8564,
  41. G.A. Shilovsky, E.V. Sorokina, T.S. Putyatina. Assessment of the human metabolome as a method for molecular diagnostics of colorectal cancer: Prevention and therapy. Biology Bulletin Reviews, Aug 2022, Vol. 12, P. 422–427.
    DOI: 10.1134/S2079086422040089, ISTINA: 468631842, IITP: 8566,
  42. G.A. Shilovsky, E.V. Sorokina, E.V. Lyubetskaya, E.V. Ferubko. New methods for inducing antioxidant protection based on nutrients and probiotics in elderly. Clinical Gerontology, 2022, Vol. 28, No. 11-12, P. 76–78, (in Russian).
    DOI: 10.26347/1607-2499202211-12076-078, eLIBRARY: 50340549, EDN: FWNDVE, ISTINA: 509276974, IITP: 8537
  43. G.A. Shilovsky, O.A. Zverkov, L.I. Rubanov, A.V. Seliverstov, V.A. Lyubetsky. Evolution of protein regulators of circadian rhythm in mammals. Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB-2022), The Thirteenth International Multiconference Abstracts, Novosibirsk, Russia, 4–8 July 2022, Novosibirsk: ICG SB RAS, 2022, P. 173.
    DOI: 10.18699/SBB-2022-093, eLIBRARY: 49238208, EDN: VWUIDL, IITP: 8485, i,
  44. V.P. Skulachev, M.Yu. Vyssokikh, B.V. Chernyak, A.Y. Mulkidjanian, M.V. Skulachev, G.A. Shilovsky, K.G. Lyamzaev, V.B. Borisov, F.F. Severin, V.A. Sadovnichii. Six functions of respiration: Isn’t it time to take control over ROS production in mitochondria, and aging along with it?. International Journal of Molecular Sciences, Aug 8 2023, Vol. 24, Iss. 16, Art. 12540.
    DOI: 10.3390/ijms241612540, PMID37628720, PMC10454651, IITP: 8560,
  45. G.A. Shilovsky, D.V. Dibrova. Regulation of cell proliferation and Nrf2-mediated antioxidant defense: Conservation of Keap1 cysteines and Nrf2 binding site in the context of the evolution of KLHL family. Life, Apr 19 2023, Vol. 13, No. 4, Art. 1045.
    DOI: 10.3390/life13041045, WOS000979194000001, Scopus: 2-s2.0-85154048715, PMID37109574, PMC10146909, IITP: 8562,
  46. V.Kh. Khavinson, N.S. Linkova, V.V. Ashapkin, G.A. Shilovsky, N.V. Borushko, M.G. Petukhov, B.F. Vanyushin. KE peptide regulates SIRT1, PARP1, PARP2 gene expression and protein synthesis in human mesenchymal stem cells aging. Advances in Gerontology, 2023, Vol. 36, No. 3, P. 302–312, (in Russian).
    DOI: 10.34922/AE.2023.36.3.003, ISTINA: 586511884
  47. G.A. Shilovsky, A.V. Seliverstov, O.A. Zverkov. Demographic indicators, models, and testing. Discrete and Continuous Models and Applied Computational Science, 2023, Vol. 31, No. 4, P. 359–374.
    DOI: 10.22363/2658-4670-2023-31-4-359-374, Scopus: 2-s2.0-85183402476, eLIBRARY: 59886097, EDN: FZWSUR, ISTINA: 633314773, IITP: 8628,
  48. G.A. Shilovsky, A.V. Seliverstov. Demographic Indicators of Probability Models. Advances in Gerontology, Sep 2023, Vol. 13, No. 3, P. 164–177, published on Apr 1st 2024.
    DOI: 10.1134/S2079057024600307, Scopus: 2-s2.0-85189546895,
  49. No English citation is currently avaliable for this publication.
    О.А. Зверков, Г.А. Шиловский, А.В. Селиверстов, В.А. Любецкий. Связь видовой продолжительности жизни с эволюцией гена Fbxl21. Proceedings of 11th Moscow Conference on Computational Molecular Biology MCCMB'23, Москва, 3–6 августа 2023, М.: ИППИ РАН, 2023.
    ⓘ ISBN: 978-5-901158-33-3, ИППИ: 8530, i,
  50. G.A. Shilovsky, T.S. Putyatina, A.V. Markov. Evolution of longevity in tetrapods: Safety is more important than metabolism level. Biochemistry (Moscow), Feb 2024, Vol. 89, No. 2, P. 322–340.
    DOI: 10.1134/S0006297924020111,
  51. G.A. Shilovsky. Calculating aging: Analysis of survival curves in the norm and pathology, fluctuations in mortality dynamics, characteristics of lifespan distribution, and indicators of lifespan variation. Biochemistry (Moscow), Feb 2024, Vol. 89, No. 2, P. 371–376.
    DOI: 10.1134/S0006297924020159,

Last update: 2024-04-24

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