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19/08/19
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Laboratory of Mathematic methods and models in bioinformatics,
Institute for Information Transmission Problems,
Russian Academy of Sciences

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Publications of Leonid Rusin

  1. L.Yu. Rusin, V.V. Malakhov. Free-living Marine Nematodes Possess no Eutely. Doklady Biological Sciences, 1998, Vol. 361, P. 331–333
  2. L.Yu. Rusin, V.V. Malakhov. Inconstancy in cell number in hypodermis of free-living marine nematodes. Russian Journal of Nematology, 1998, Vol. 6, No. 1, Abstracts of papers presented at the Second English Language International Symposium of the Russian Society of Nematologists (Moscow, 23-30 August, 1997)
  3. L.Yu. Rusin, V.V. Aleshin, O.S. Kedrova, I.A. Milyutina, N.S. Vladychenskaya, N.B. Petrov. Molecular evidence for phylogenetic reliability of Araeolaimida sensu stricto. Proceedings of the Zoological Institute of the RAS, 1999, P. 280, Proceedings of the international conference III International Nematology Symposium, St.Petersburg, Russia, August 2127 1999
  4. No English citation is currently avaliable for this publication.
    L.Yu. Roussine. Analysis of the 18S rRNA gene structure in nematodes: the origin of Secernentea. 99, 1999,  25, VI -99, . .. , , , 2023 1999
  5. L.Yu. Rusin, V.V. Aleshin, N.S. Vladychenskaya, I.A. Milyutina, O.S. Kedrova, N.B. Petrov. Trefusiidae are a subtaxon of marine Enoplida (Nematoda): evidence from primary structure of hairpin 35 and 48 loops of SSU rRNA gene. Molecular Biology, 2001, Vol. 35, No. 5, P. 778–784, DOI: 10.1023/A:1012394808661, Scopus: 2-s2.0-0035438250, eLIBRARY: 13372649,
  6. V.V. Aleshin, L.Yu. Roussine, I.A. Milyutina, O.S. Kedrova, N.S. Vladychenskaya, N.B. Petrov. Analysis of 18S rRNA structure in Araeolaimida taxa sheds light on the internal topology of the monhysterid-secernentian complex within the Nematoda. Russian Journal of Nematology, 2001, Vol. 9, No. 2, P. 143, Abstracts of the Fourth English Language International Symposium of the Russian Society of Nematologists (dedicated to 110th anniversary of Professor A.A. Paramonov, Russia, Moscow, 11th-14th June, 2001)
  7. L.Yu. Roussine, V.V. Aleshin, I.A. Milyutina, O.S. Kedrova, N.S. Vladychenskaya, N.B. Petrov. Primary structure of the loops of helices 35 and 48 of 18S rRNA suggests that Trefusiida is a subtaxon of marine Enoplida (Nematoda). Russian Journal of Nematology, 2001, Vol. 9, No. 2, P. 159–160, Abstracts of the Fourth English Language International Symposium of the Russian Society of Nematologists (dedicated to 110th anniversary of Professor A.A. Paramonov, Russia, Moscow, 11th-14th June, 2001)
  8. L.Yu. Roussine, P. De Ley. Small subunit ribosomal RNA as an evolutionary marker for deep phylogeny within Nematoda. Russian Journal of Nematology, 2001, Vol. 9, No. 2, P. 160, Abstracts of the Fourth English Language International Symposium of the Russian Society of Nematologists (dedicated to 110th anniversary of Professor A.A. Paramonov, Russia, Moscow, 11th-14th June, 2001)
  9. L.Yu. Roussine, P. De Ley, V.V. Aleshin, N.B. Petrov. A simple molecular diagnostic of marine Enoplida. Proceedings of the Fourth International Congress of Nematology, Tenerife, Spain, 8-13 June 813 2002, (Nematology Monographs and Perspectives, V. 2), P. 178, poster abstract,
  10. L.Yu. Roussine, P. De Ley, V.V. Aleshin, J.R. Vanfleteren, D. Sturhan, A. Vierstraete, M. Blaxter. Phylogeny of Enoplia: parsimony estimations with SSU rDNA sequence data. Proceedings of the Fourth International Congress of Nematology, Tenerife, Spain, 8-13 June 813 2002, (Nematology Monographs and Perspectives, V. 2), P. 178, poster abstract,
  11. L.Yu. Roussine, V.V. Aleshin, A.V. Tchesunov, G.I. Atrashkevich. SSU rRNA gene of Soboliphyme baturini Petrow, 1930 (Nematoda: Dioctophymida) and a reappraisal of molecular bounds of Dorylaimia. Proceedings of the Fourth International Congress of Nematology, Tenerife, Spain, 8-13 June 813 2002, (Nematology Monographs and Perspectives, V. 2), P. 178–179, poster abstract,
  12. L.Yu. Rusin, V.V. Aleshin, A.V. Tchesunov, G.I. Atrashkevich. The 18S ribosomal RNA gene of Soboliphyme baturini Petrow, 1930 (Nematoda: Dioctophymida) and its implications for phylogenetic relationships within Dorylaimia. Nematology, 2003, Vol. 5, No. 4, P. 615–628, DOI: 10.1163/156854103322683337, WOS000187933000012, Scopus: 2-s2.0-0348196968, eLIBRARY: 13434350,
  13. L.Yu. Rusin. Homoplasy matrices: a tool for choosing between alternative topologies?. Proceedings of the 2nd European Conference on Computational Biology ECCB 2003. In conjunction with JOBIM Journees Ouvertes: Biologie, Informatique, Mathematique 2003, Paris, France, September 2730 2003,
  14. L.Yu. Roussine, P. De Ley, M. Blaxter, A. Vierstraete, V.V. Aleoshin. The SSU rRNA gene as a phylogenetic marker within major groups of Nematoda. Russian Journal of Nematology, 2004, Vol. 11, No. 2, P. 145–146
  15. L.Yu. Rusin. Circumventing limitations of parsimony heuristic search: screening the equal tree space under minimum homoplasy requirement. Proceedings of the international conference The Annual New Zealand Phylogenetics Meeting 2004, Mt Ruapehu, New Zeland, February 1520 2004
  16. V.A. Lyubetsky, K.Yu. Gorbunov, V.V. V'yugin, L.Yu. Rusin. Removing noise in protein multiple alignment. Information Processes, 2005, Vol. 5, No. 5, P. 380–391, in Russian
  17. L.Yu. Rusin, V.V. V'yugin, V.A. Lyubetsky. Enhancing phylogenetic inference: concentration of the signal in sequence data. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB05, July 1821 2005, P. 342–346
  18. L.Yu. Rusin, V.G. Gagarin, M. Blaxter, V.V. Aleoshin. The origin of Secernentea and phylogenesis of Chromadoria: evidence from SSU rRNA. Russian Journal of Nematology, 2005, Vol. 13, No. 1, P. 115, Abstract of the Sixth English Language International Symposium of the Russian Society of Nematologsts (Moscow, 13th-17th, 2005)
  19. L.Yu. Rusin, V.V. V'yugin, V.A. Lyubetsky. A method to optimize primary sequence data for enhanced tree resolution. Proceedings of the 4th European Conference on Computational Biology ECCB 2005, Madrid, Spain, September 28 October 01 2005
  20. L.Yu. Rusin, V.V. V'yugin, V.A. Lyubetsky. Phylogenetic signal vs. informational noise: combat for resolution. Proceedings of the international conference 9th Evolutionary Biology Meeting, Marseille, France, September 2123 2005
  21. L.Y. Rusin, V.G. Gagarin, M. Blaxter, V.V. Aleshin. Molecular evidence brings the roots of the Secernentea, the major group of round worms, in shaper focus. Proceedings of the international conference 9th Evolutionary Biology Meeting, Marseille, France, September 2123 2005
  22. V.A. Lyubetsky, K.Yu. Gorbunov, L.Yu. Rusin, V.V. V'yugin. Algorithms to reconstruct evolutionary events at molecular level and infer species phylogeny. In: Bioinformatics of Genome Regulation and Structure II, Springer US, 2006, Part 1, P. 189–204, DOI: 10.1007/0-387-29455-4_20, WOS000234508700021,
  23. L.Yu. Rusin, V.A. Lyubetsky. Refinement of phylogenetic signal in multiple sequence alignment: results of simulation study. Proceedings of the Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2006), Novosibirsk, Russia, July 1622 2006, Vol. 3, P. 222–224, WOS000243859500049, i,
  24. L.Yu. Rusin, V.A. Lyubetsky, O.A. Zverkov, K.Yu. Gorbunov, V.V. V'yugin. Signal concentration in multiple sequence alignment: empirical and simulation studies. Society for Molecular Biology and Evolution Meeting SMBE'2006: Genomes, Evolution and Bioinformatics (GEB2006) conference, Tempe, Arizona, USA, May 2428 2006, poster presentation, i
  25. No English citation is currently avaliable for this publication.
    .. , .. , .. . Metazoa. , 2007,  7,  3, . 199–213, eLIBRARY22134008, i,
  26. L.Yu. Rusin, V.A. Lyubetsky. Phylogenomics of Metazoa: constructing the gene set. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB07, Moscow, Russia, July 2731 2007, P. 267–268,
  27. N.B. Petrov, V.V. Aleshin, I.P. Vladychenskaya, O.G. Manylov, G.S. Slyusarev, A.N. Pegova, L.Yu. Rusin, M.V. Ophitserov. Combined 18S and 28S rRNA gene sequences suggest relatedness of gastrotrichs and dicyemids to flat worms, and orthonectids to annelids. Proceedings of the international scientific conference Computational Phylogenetics and Molecular Systematics, CPMS2007, Moscow, Russia, November 1619 2007, KMK Scientific Press, P. 249–252
  28. L.Yu. Rusin, V.A. Lyubetsky. Algorithms to model gene evolution events and reconstruct multigene phylogenies of species. Proceedings of the international conference Computational Phylogenetics and Molecular Systematics, CPMS2007, Moscow, Russia, November 1619 2007, KMK Scientific Press, P. 274–277
  29. L.Yu. Rusin, V.A. Lyubetsky, S. Kumar. Phylogenomic pipeline and construction of a multi-gene dataset for Metazoa. Proceedings of the Annual Meeting of the Society for Molecular Biology and Evolution SMBE2008, Barcelona Spain, June 58 2008
  30. K.V. Mikhailov, A.V. Konstantinova, M.A. Nikitin, P.V. Troshin, L.Yu. Rusin, V.A. Lyubetsky, Yu.V. Panchin, A.P. Mylnikov, L.L. Moroz, S. Kumar, V.V. Aleoshin. The Gastrea theory in postgenomic age: cell differentiation preceded multicellularity in early metazoan evolution. Proceedings of the ICREA Conference on the Origin and Early Evolution of Metazoans, Barcelona Spain, October 2425 2008
  31. K.V. Mikhailov, A.V. Konstantinova, M.A. Nikitin, P.V. Troshin, L.Yu. Rusin, V.A. Lyubetsky, Yu.V. Panchin, A.P. Mylnikov, L.L. Moroz, S. Kumar, V.V. Aleoshin. The origin of Metazoa: a transition from temporal to spatial cell differentiation. BioEssays, Jul 2009, Vol. 31, Iss. 7, P. 758–768, DOI: 10.1002/bies.200800214, WOS000267610500009, Scopus: 2-s2.0-70349323101, PMID19472368, eLIBRARY: 15306649, i,
  32. V.V. Aleshin, K.V. Mikhailov, A.V. Konstantinova, M.A. Nikitin, L.Yu. Rusin, D.A. Buinova, O.S. Kedrova, N.B. Petrov. On the phylogenetic position of insects in the Pancrustacea clade. Molecular Biology, 2009, Vol. 43, No. 5, P. 804–818, DOI: 10.1134/S0026893309050124, WOS000270682000012, Scopus: 2-s2.0-70350373897, eLIBRARY: 15305753,
  33. K.V. Mikhailov, A.V. Konstantinova, M.A. Nikitin, V.V. Aleoshin, L.Yu. Rusin, Yu.V. Panchin. Genomic insights into the origins of metazoan ell differentiation. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB09, Moscow, Russia, July 2023 2009, P. 9–10
  34. L.Yu. Rusin, V.V. Aleoshin, V.A. Lyubetsky. A phylogenomic pipeline to construct multi-gene datasets and infer multi-gene trees. Proceedings of the international conference Celebrating Darwin: from the Origin of Species to Deep Metazoan Phylogeny, DMP09, Berlin, Germany, March 46 2009
  35. A.V. Troitsky, L.Yu. Rusin, V.V. Aleoshin, (Eds.). Molecular Phylogenetics. Contributions to the 2nd Moscow International Conference Molecular Phylogenetics (Moscow, Russia, May 1821, 2010), Moscow: Torus Press, 2010, 218 : ill., ISBN: 978-5-94588-074-0
  36. K.V. Lopatovskaya, K.Yu. Gorbunov, L.Yu. Rusin, A.V. Seliverstov, V.A. Lyubetsky. The evolution of proline synthesis transcriptional regulation in gammaproteobacteria. Moscow University Biological Sciences Bulletin, 2010, Vol. 65, No. 4, P. 211–212, DOI: 10.3103/S0096392510040255,
  37. K.V. Lopatovskaya, K.Yu. Gorbunov, L.Yu. Rusin, A.V. Seliverstov, V.A. Lyubetsky. The evolution of proline synthesis transcription regulation in gamma proteobacteria. In: Molecular Phylogenetics, Contributions to the 2nd Moscow International Conference Molecular Phylogenetics (MolPhy-2), Moscow: Torus Press, 2010, P. 132–133
  38. K.V. Lopatovskaya, L.Yu. Rusin, A.V. Seliverstov, V.A. Lyubetsky. The Evolution of NtcA- and NtcB-regulons in Cyanobacteria and Rhodophyte Chloroplasts. In: Molecular Phylogenetics, Contributions to the 2nd Moscow International Conference Molecular Phylogenetics (MolPhy-2), Moscow: Torus Press, 2010, P. 134–135
  39. K.Yu. Gorbunov, L.I. Rubanov, L.Yu. Rusin, V.A. Lyubetsky. An accurate algorithm of cubic complexity to build supertrees. Zitteliana. An International Journal of Palaeontology and Geobiology. Series B, Vol. 30, Abstracts of the international conference Deep Metazoan Phylogeny 2011 new data, new challenges", Munchen, Germany, October 1114 2011, P. 20, i,
  40. A.V. Troitsky, L.Yu. Rusin, V.V. Aleoshin, (Eds.). Molecular Phylogenetics. Contributions to the 3rd Moscow International Conference Molecular Phylogenetics (Moscow, Russia, July 31 August 4, 2012), Moscow: Torus Press, 2012, 172 p.: ill., ISBN: 978-5-94588-118-1, eLIBRARY: 25260537
  41. V.A. Lyubetsky, L.I. Rubanov, L.Yu. Rusin, K.Yu. Gorbunov. Cubic time algorithms of amalgamating gene trees and building evolutionary scenarios. Biology Direct, Dec 22 2012, Vol. 7, Art. 48, DOI: 10.1186/1745-6150-7-48, WOS000315728400001, Scopus: 2-s2.0-84871384285, PMID23259766, eLIBRARY: 20488413,
  42. O.A. Zverkov, L.Yu. Rusin, A.V. Seliverstov, V.A. Lyubetsky. Direct Repeat Insertions in Microevolution of Plastids and Mitochondria of Seed Plants. Information Processes, 2012, Vol. 12, Iss. 3, P. 191–197, in Russian
  43. O.A. Zverkov, L.Yu. Rusin, A.V. Seliverstov, V.A. Lyubetsky. Study of Direct Repeats in Micro Evolution of Plant Mitochondria and Plastids Based on Protein Clustering. Moscow University Biological Sciences Bulletin, 2013, Vol. 68, No. 2, P. 58–62, DOI: 10.3103/S0096392513020119, Scopus: 2-s2.0-84879161517, eLIBRARY: 20440011, i,
  44. V.A. Lyubetsky, K.Yu. Gorbunov, L.Yu. Rusin. Detecting conflicts in large sets of phylogenetic trees. Proceedings of the BioSyst.EU 2013 Global systematics conference, Vienna, Austria, February 1822 2013, P. 131,
  45. A. Troitsky, L. Rusin, N. Petrov, (Eds.). Molecular Phylogenetics. Contributions to the 4nd Moscow International Conference Molecular Phylogenetics (Moscow, Russia, September 2326, 2014), Moscow: Torus Press, 2014, 90 p.: ill., ISBN: 978-5-94588-153-2, eLIBRARY: 25432779
  46. L.Yu. Rusin, E.V. Lyubetskaya, K.Yu. Gorbunov, V.A. Lyubetsky. Reconciliation of Gene and Species Trees. BioMed Research International, Mar 27 2014, Vol. 2014, Art. 642089, 22 pp., DOI: 10.1155/2014/642089, WOS000333909600001, Scopus: 2-s2.0-84899516778, PMID24800245, eLIBRARY: 21873983. $ MESRF 8481 & 14.740.11.1053, RFBR 13-04-40196-H.
  47. V.A. Lyubetsky, L.I. Rubanov, O.A. Zverkov, L.Yu. Rusin, A.V. Seliverstov, A.G. Zaraisky. A method of detecting local gene synteny rearrangement. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB15, Moscow, Russia, July 1619 2015, Moscow, IITP RAS, 2015, P. 249–252.
    eLIBRARY: 23913986. $ RFBR 13-04-40196-. i,
  48. V.A. Lyubetsky, L.I. Rubanov, A.V. Bairamov, I.V. Shandarin, A.S. Ivanova, L.Yu. Rusin, O.A. Zverkov, A.V. Seliverstov, A.G. Zaraisky. A Large-scale Search for Gene Losses, Gains and Syntenic Rearrangements in Vertebrate Animals. Materials of the VIII Moscow International Congress Biotechnology: State of the Art and Prospects of Development, Moscow, Russia, March 1720 2015, Part 1, P. 260–261.
    $ RFBR 13-04-40196-.
  49. L.Yu. Rusin. Metagenomics and biodiversity of sphagnum bogs. Molecular Biology, Sep 2016, Vol. 50, No. 5, P. 645–648.
    DOI: 10.1134/S0026893316050150, WOS000386568600002, Scopus: 2-s2.0-84991584961, eLIBRARY: 27582776, ISTINA: 29998716,
  50. O.A. Zverkov, L.Yu. Rusin, V.A. Lyubetsky, V.V. Aleoshin. Problem of phylogenetic position of dicyemids. Abstracts of the International Symposium "Cognitive Sciences, Genomics and Bioinformatics" (CSGB-2016), Novosibirsk, Russia, August 2931 2016, P. 68,
  51. O.A. Zverkov, K.V. Mikhailov, L.Yu. Rusin, V.A. Lyubetsky, V.V. Aleoshin. Phylogenomic evidence disentangles affinities of the Mesozoa. Proceedings of the 4th International Congress on Invertebrate Morphology (ICIM4), Moscow, Russia, August 1823 2017, P. 55.
    $ RSF 14-50-00150. i,
  52. A. Troitsky, L. Rusin, (Eds.). Molecular Phylogenetics. Contributions to the 5th Moscow International Conference Molecular Phylogenetics and Biodiversity Biobanking (Moscow, Russia, August 2528, 2018), Moscow: Torus Press, 2018, 138 p.: ill., ISBN: 978-5-94588-234-8
  53. O.A. Zverkov, L.I. Rubanov, L.Yu. Rusin, A.V. Seliverstov, V.A. Lyubetsky. Finding long highly conserved elements in complete animal genomes. CEUR Workshop Proceedings, Feb 23 2018, Vol. 2064, Convergent Cognitive Information Technologies 2017, P. 402–408, in Russian.
    Scopus: 2-s2.0-85044513196, ISTINA: 110759752. $ 14-50-00150. i,
  54. V.V. Aleoshin, G.S. Slyusarev, K.V. Mikhailov, L.Yu. Rusin, O.V. Popova, O.A. Zverkov, V.A. Lyubetsky. Orthonectida and Dicyemida: two stories of body plan simplification. In: Molecular Phylogenetics, (Eds.: A. Troitsky, L. Rusin), Moscow: Torus Press, 2018, P. 3–4.
    DOI: 10.30826/MolPhy2018-01, eLIBRARY: 36627878,
  55. No English citation is currently avaliable for this publication.
    .. , .. , .. , .. , .. , .. , .. , .. . Mesozoa. , , 160- . .. , , 1921 2018, . 15.
    eLIBRARY36828957,
  56. No English citation is currently avaliable for this publication.
    .. , .. , .. , .. , .. , .. , .. , .. . Mesozoa. , , , 21 2018, , i,
  57. O.A. Zverkov, K.V. Mikhailov, S.V. Isaev, L.Y. Rusin, O.V. Popova, M.D. Logacheva, A.A. Penin, L.L. Moroz, Y.V. Panchin, V.A. Lyubetsky, V.V. Aleoshin. Dicyemida and Orthonectida: Two stories of body plan simplification. Frontiers in Genetics, 24 May 2019, Vol. 10, Art. 443.
    DOI: 10.3389/fgene.2019.00443, WOS000468953800001, Scopus: 2-s2.0-85067846320, PMID31178892, ISTINA: 197815106. $ RSF 14-50-00150, RFBR 18-29-13037.
  58. O.A. Zverkov, K.V. Mikhailov, S.V. Isaev, L.Y. Rusin, M.D. Logacheva, A.A. Penin, L.L. Moroz, Y.V. Panchin, V.A. Lyubetsky, V.V. Aleoshin. Dicyemida and Orthonectida: Two stories of body plan simplification. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB19, Moscow, Russia, July 2730 2019, i, ,

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