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Laboratory of Mathematic methods and models in bioinformatics,
Institute for Information Transmission Problems,
Russian Academy of Sciences
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Publications of Konstantin Gorbunov

  1. K.Yu. Gorbunov. There does not exist an enumerable family of context-free grammars that generates the class of single-valued languages. Mathematical Notes, Jul-Aug 1991, Vol. 50, Iss. 1, P. 683–687, DOI: 10.1007/BF01156601, WOS: A1991HK92100004, eLIBRARY: 30894908,
  2. K.Yu. Gorbunov. Graphs which cannot realize planar grid are deducible in a context-free grammar. Doklady Akademii Nauk SSSR, 1991, Vol. 316, Iss. 2, P. 270–274, in Russian, WOS: A1991FF71600003
  3. K.Yu. Gorbunov. On a complexity of the formula (A ∨ B) ⇒ C. Theoretical Computer Science, Nov 6 1998, Vol. 207, Iss. 2, P. 383–386, DOI: 10.1016/S0304-3975(98)00074-7, WOS: 000076033800007, eLIBRARY: 13302525, i,
  4. K.Yu. Gorbunov. An estimate of the tree-width of a planar graph which has not a given planar grid as a minor. In: Graph-Theoretic Concepts in Computer Science, Lecture Notes in Computer Science, 1998, Vol. 1517, P. 372–383, DOI: 10.1007/10692760_30, WOS: 000083174200030, eLIBRARY: 24947049,
  5. R. Diestel, T.R. Jensen, K.Yu. Gorbunov, C. Thomassen. Highly connected sets and the excluded grid theorem. Journal of Combinatorial Theory. Series B, Jan 1999, Vol. 75, Iss. 1, P. 61–73, DOI: 10.1006/jctb.1998.1862, WOS: 000078082100005, Scopus: 2-s2.0-0001853238, eLIBRARY: 13323756,
  6. K.Yu. Gorbunov, V.A. Lyubetsky. On an algorithm of detecting regulatory signal in sequence data. Logic research, Moscow, Russia, Nauka, 2000, Iss. 7, P. 159–163, in Russian
  7. V.V. V'yugin, K.Yu. Gorbunov, V.A. Lyubetsky. Algorithms of detecting regulatory signal and constructing evolutionary trees. Proceedings of the II International Conference “Complex Systems: Control and Modeling Problems”, Samara, Russia, June 20–23 2000, P. 130–137, in Russian
  8. No English citation is currently avaliable for this publication.
    К.Ю. Горбунов. Об оценке матричной сложности множества. Труды II международной конференции «Проблемы управления и моделирования в сложных системах», Самара, 20–23 июня 2000, Самара: Самарский научный центр РАН, 2000, стр. 138–140
  9. L.V. Danilova, K.Yu. Gorbunov, M.S. Gelfand, V.A. Lyubetskii. Algorithm of regulatory signal recognition in DNA sequences. Molecular Biology, Nov–Dec 2001, Vol. 35, No. 6, P. 841–848, DOI: 10.1023/A:1013282101105, WOS: 000173100100008, Scopus: 2-s2.0-0035497842, eLIBRARY: 13370921,
  10. L.V. Danilova, K.Yu. Gorbunov, M.S. Gelfand, V.A. Lyubetsky. An algorithm to detect regulatory signals in DNA sequence data. Information processes, 2001, Vol. 1, No. 1, P. 56–63, in Russian
  11. No English citation is currently avaliable for this publication.
    К.Ю. Горбунов. Об одной модели информационной зависимости в алгебраической геометрии. Информационные процессы, 2001, том 1, № 2, стр. 147–149, eLIBRARY: 9117531, i,
  12. K.Yu. Gorbunov, E.V. Lyubetskaya, V.A. Lyubetsky. On two algorithms of searching for alternative RNA structures. Information processes, 2001, Vol. 1, No. 2, P. 178–187, in Russian
  13. K.Yu. Gorbunov, V.A. Lyubetsky. An algorithm to search for conservative RNA secondary structures in a database of RNA fragments. Information processes, 2002, Vol. 2, No. 1, P. 55–58, in Russian
  14. K.Yu. Gorbunov, V.A. Lyubetsky. An algorithm for searching for common secondary structures in a set of RNA sequences. Proceedings of the Third International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2002), Novosibirsk, Russia, July 14–20 2002, Vol. 3, P. 20–22, i,
  15. K.Yu. Gorbunov, A.A. Mironov, V.A. Lyubetsky. Search for conserved secondary structures of RNA. Molecular Biology, Sep-Oct 2003, Vol. 37, No. 5, P. 723–732, DOI: 10.1023/A:1026089011336, WOS: 000186455600011, Scopus: 2-s2.0-1642578789, eLIBRARY: 13442137,
  16. K.Yu. Gorbunov, V.A. Lyubetsky. An algorithm for detecting common secondary structures in a set of RNA sequences. Biophysics, 2003, Vol. 48, Suppl. 1, P. S56–S67, Scopus: 2-s2.0-33750574791, eLIBRARY: 13432908
  17. V.A. Lyubetsky, K.Yu. Gorbunov. Searching for alternative RNA secondary structures. Information processes, 2003, Vol. 3, No. 1, P. 47–60, in Russian
  18. K.Yu. Gorbunov, V.A. Lyubetsky. Detecting common secondary structures in a set of RNA sequences and its testing. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB’03, Moscow, Russia, July 22–25 2003, P. 83–85
  19. K.Yu. Gorbunov. A generalization of the Hilbert basis theorem. Mathematical Notes, Sep–Oct 2003, Vol. 74, No. 3-4, P. 483–490, DOI: 10.1023/A:1026187625738, WOS: 000186455400022, Scopus: 2-s2.0-0345863703, eLIBRARY: 13416954,
  20. K.Yu. Gorbunov, V.A. Lyubetsky. A model of tryptophan biosynthesis regulation. Proceedings of the Fourth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2004), Novosibirsk, Russia, July 25–30 2004, Vol. 2, P. 53–55, WOS: 000242400300011, i,
  21. K.Yu. Gorbunov, V.A. Lyubetsky. A model of biosynthesis regulation. Proceedings of the VI International Conference “Complex Systems: Control and Modeling Problems”, Samara, Russia, June 14–17 2004, P. 151–153, in Russian
  22. V.A. Lyubetsky, K.Yu. Gorbunov, V.V. V'yugin. Inferring evolutionary events, quality of COGs, measuring the dissimilarity between gene and species trees. Presentation abstracts of the EMBO World Phylogenetic Course 2004, Rio de Janeiro, Brazil, Nov 1–7 2004, устное сообщение
  23. K.Yu. Gorbunov, V.A. Lyubetsky. Identification of ancestral genes that introduce incongruence between protein- and species trees. Molecular Biology, Sep–Oct 2005, Vol. 39, No. 5, P. 741–751, DOI: 10.1007/s11008-005-0089-6, Scopus: 2-s2.0-27744576123, eLIBRARY: 13498057,
  24. V.A. Lyubetsky, K.Yu. Gorbunov, S.A. Pirogov, L.I. Rubanov, A.V. Seliverstov. An algorithm and search results for a model of gene expression regulation with RNA secondary structures in bacteria. Information Processes, 2005, Vol. 5, No. 5, P. 337–366, in Russian
  25. V.A. Lyubetsky, K.Yu. Gorbunov, V.V. V'yugin, L.Yu. Rusin. Removing noise in protein multiple alignment. Information Processes, 2005, Vol. 5, No. 5, P. 380–391, in Russian
  26. K.Yu. Gorbunov, V.A. Lyubetsky. Algorithms to reconstruct ancestral gene evolution events. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB’05, Moscow, Russia, July 18–21 2005, P. 128–129
  27. S.A. Pirogov, K.Yu. Gorbunov, V.A. Lyubetsky. Macro- and microconditions in a model of attenuator regulation of gene expression in bacteria. Proceedings of the VII International Conference “Complex Systems: Control and Modeling Problems”, Samara, Russia, June 27 – July 1 2005, P. 210–215, in Russian
  28. V.A. Lyubetsky, K.Yu. Gorbunov, L.Yu. Rusin, V.V. V'yugin. Algorithms to reconstruct evolutionary events at molecular level and infer species phylogeny. In: Bioinformatics of Genome Regulation and Structure II, Springer US, 2006, Part 1, P. 189–204, DOI: 10.1007/0-387-29455-4_20, WOS: 000234508700021,
  29. K.Yu. Gorbunov, V.A. Lyubetsky. Inferring regulatiory signal profiles and evolutionary events. Proceedings of the Fifth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2006), Novosibirsk, Russia, July 16–22 2006, Vol. 3, P. 151–154, WOS: 000243859500031, i,
  30. L.Yu. Rusin, V.A. Lyubetsky, O.A. Zverkov, K.Yu. Gorbunov, V.V. V'yugin. Signal concentration in multiple sequence alignment: empirical and simulation studies. Society for Molecular Biology and Evolution Meeting SMBE'2006: Genomes, Evolution and Bioinformatics (GEB2006) conference, Tempe, Arizona, USA, May 24–28 2006, poster presentation, i
  31. K.Yu. Gorbunov. Bound on the cardinality of a covering of an arbitrary randomness test by frequency tests. Problems of Information Transmission, 2007, Vol. 43, No. 1, P. 48–56, DOI: 10.1134/S0032946007010061, WOS: 000255299000006, Scopus: 2-s2.0-34247587197, eLIBRARY: 13557019,
  32. K.Yu. Gorbunov, V.A. Lyubetsky. Reconstruction of ancestral regulatory signals along a transcription factor tree. Molecular Biology, Oct 2007, Vol. 41, No. 5, P. 836–842, DOI: 10.1134/S0026893307050172, WOS: 000250240200016, Scopus: 2-s2.0-35349021081, eLIBRARY: 13544074,
  33. No English citation is currently avaliable for this publication.
    В.А. Любецкий, Е.А. Жижина, К.Ю. Горбунов, А.В. Селиверстов. Модель эволюции нуклеотидной последовательности. Математические методы распознавания образов, 2007, том 13, № 1, стр. 605–609, eLIBRARY: 29129790,
  34. K.Yu. Gorbunov, D. Radionov, O.N. Laikova, M.S. Gelfand, V.A. Lyubetsky. Reconstruction of ancestral regulatory signal along a phylogeny. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB’07, Moscow, Russia, July 27–31 2007, P. 111–113,
  35. K.Yu. Gorbunov, V.A. Lyubetsky. Modeling evolution of the nucleotide sequence with secondary structure. Proceedings of the international scientific conference “Computational Phylogenetics and Molecular Systematics, CPMS’2007”, Moscow, Russia, November 16–19 2007, KMK Scientific Press, P. 68–75
  36. V.A. Lyubetsky, A.V. Seliverstov, K.Yu. Gorbunov. Models of gene expression regulation and evolution of regulatory elements. Proceedings of the international scientific conference “Computational Phylogenetics and Molecular Systematics, CPMS’2007”, Moscow, Russia, November 16–19 2007, KMK Scientific Press, P. 158–165
  37. K.Yu. Gorbunov, V.G. Kanovei, V.A. Lyubetsky. Inferring optimal scenario of gene evolution along a species tree. Abstracts of The Sixth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2008), Novosibirsk, Russia, June 22–28 2008, P. 90, i,
  38. No English citation is currently avaliable for this publication.
    Е.В. Любецкая, К.Ю. Горбунов. Алгоритмы реконструкции эволюции регуляторных сигналов. Труды 51-й научной конференции МФТИ «Современные проблемы фундаментальных и прикладных наук», Москва, 28–30 ноября 2008, М.: МФТИ, 2008, часть 1, стр. 144–146,
  39. K.Yu. Gorbunov, E.V. Lyubetskaya, E.A. Asarin, V.A. Lyubetsky. Modeling evolution of the bacterial regulatory signals involving secondary structure. Molecular Biology, 2009, Vol. 43, No. 3, P. 485–499, DOI: 10.1134/S0026893309030170, WOS: 000267296800017, Scopus: 2-s2.0-67650653463, eLIBRARY: 13601983,
  40. K.Yu. Gorbunov, V.A. Lyubetsky. Reconstructing the evolution of genes along the species tree. Molecular Biology, Oct 2009, Vol. 43, No. 5, P. 881–893, DOI: 10.1134/S0026893309050197, WOS: 000270682000019, Scopus: 2-s2.0-70350350918, eLIBRARY: 15308878,
  41. K.Yu. Gorbunov, V.A. Lyubetsky. Inferring gene evolution along a species tree. Proceedings of the International Moscow Conference on Computational Molecular Biology: MCCMB’09, Moscow, Russia, July 20–23 2009, P. 120–121
  42. No English citation is currently avaliable for this publication.
    К.Ю. Горбунов, Е.В. Любецкая. Реконструкция эволюции белковых семейств. Труды 32-й конференции «Информационные технологии и системы» (ИТиС’09), пос. д/о Бекасово, 15–18 декабря 2009, стр. 332–334, i,
  43. K.V. Lopatovskaya, K.Yu. Gorbunov, L.Yu. Rusin, A.V. Seliverstov, V.A. Lyubetsky. The evolution of proline synthesis transcriptional regulation in gammaproteobacteria. Moscow University Biological Sciences Bulletin, 2010, Vol. 65, No. 4, P. 211–212, DOI: 10.3103/S0096392510040255,
  44. K.Yu. Gorbunov, O.N. Laikova, D.A. Rodionov, M.S. Gelfand, V.A. Lyubetsky. Evolution of regulatory motifs of bacterial transcription factors. In Silico Biology, 2010, Vol. 10, No. 3-4, P. 163–183, DOI: 10.3233/ISB-2010-0425, Scopus: 2-s2.0-80052006134, PMID: 22430290, eLIBRARY: 18087295,
  45. J.-Ph. Doyon, C. Scornavacca, K.Yu. Gorbunov, G.J. Szollosi, V. Ranwez, V. Berry. An efficient algorithm for gene/species trees parsimonious reconciliation with losses, duplications and transfers. In: Comparative Genomics, Lecture Notes in Bioinformatics, Springer-Verlag Berlin Heidelberg, 2010, Vol. 6398, P. 93–108, DOI: 10.1007/978-3-642-16181-0_9, WOS: 000289457100009, Scopus: 2-s2.0-78649930876, eLIBRARY: 16980033,
  46. No English citation is currently avaliable for this publication.
    К.Ю. Горбунов, В.А. Любецкий. Об одном алгоритме согласования деревьев генов и видов с учетом дупликаций, потерь и горизонтальных переносов генов. Информационные процессы, 2010, том 10, № 2, стр. 140–144, eLIBRARY: 17685313, i,
  47. K.Yu. Gorbunov, V.A. Lyubetsky. A fast algorithm of building species supertrees with a set of gene trees. Proceedings of the Seventh International Conference on Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB'2010), Novosibirsk, Russia, June 20–27 2010, P. 92
  48. K.V. Lopatovskaya, K.Yu. Gorbunov, L.Yu. Rusin, A.V. Seliverstov, V.A. Lyubetsky. The evolution of proline synthesis transcription regulation in gamma proteobacteria. Molecular Phylogenetics, Contributions to the 2nd Moscow International Conference “Molecular Phylogenetics” (MolPhy-2), Moscow: Torus Press, 2010, P. 132–133
  49. K.Yu. Gorbunov, V.A. Lyubetsky. The tree nearest on average to a given set of trees. Problems of Information Transmission, Sep 2011, Vol. 47, No. 3, P. 274–288, DOI: 10.1134/S0032946011030069, WOS: 000299374700006, Scopus: 2-s2.0-84855917719, eLIBRARY: 18033897,
  50. K.Yu. Gorbunov, L.I. Rubanov, L.Yu. Rusin, V.A. Lyubetsky. An accurate algorithm of cubic complexity to build supertrees. Zitteliana. An International Journal of Palaeontology and Geobiology. Series B, Vol. 30, Abstracts of the international conference “Deep Metazoan Phylogeny 2011 – new data, new challenges", Munchen, Germany, October 11–14 2011, P. 20, i,
  51. O.A. Zverkov, K.Y. Gorbunov, A.V. Seliverstov, V.A. Lyubetsky. Protein clustering with accounting for domen architecture. Proceedings of the 54th conference of Moscow Institute of Physics and Technology “Basic and applied research in life sciences and engineering in modern information environment”, Moscow, Russia, November 25–26 2011, Section of Management and applied mathematics, Vol. 2, P. 88–89, in Russian
  52. No English citation is currently avaliable for this publication.
    Е.В. Любецкая, К.Ю. Горбунов, А.В. Селиверстов, В.А. Любецкий. Дифференциальные уравнения, описывающие клеточный процесс. Труды 54-й научной конференции МФТИ «Проблемы фундаментальных и прикладных естественных и технических наук в современном информационном обществе», Москва, 25–26 ноября 2011, М.: МФТИ, 2011, Управление и прикладная математика, том 2, стр. 91–92, i,
  53. K.Yu. Gorbunov, V.A. Lyubetsky. Fast algorithm to reconstruct a species supertree from a set of protein trees. Molecular Biology, Feb 2012, Vol. 46, No. 1, P. 161–167, DOI: 10.1134/S0026893312010086, WOS: 000302960100020, Scopus: 2-s2.0-84857212763, eLIBRARY: 17976882,
  54. K.Yu. Gorbunov, A.V. Seliverstov, V.A. Lyubetsky. Geometric relationship between parallel hyperplanes, quadrics, and vertices of a hypercube. Problems of Information Transmission, Apr 2012, Vol. 48, Iss. 2, P. 185–192, DOI: 10.1134/S0032946012020081, WOS: 000306338300008, Scopus: 2-s2.0-84865705227, eLIBRARY: 20473311,
  55. V.A. Lyubetsky, L.I. Rubanov, L.Yu. Rusin, K.Yu. Gorbunov. Cubic time algorithms of amalgamating gene trees and building evolutionary scenarios. Biology Direct, Dec 22 2012, Vol. 7, Art. 48, DOI: 10.1186/1745-6150-7-48, WOS: 000315728400001, Scopus: 2-s2.0-84871384285, PMID: 23259766, eLIBRARY: 20488413,
  56. K.Yu. Gorbunov, V.A. Lyubetsky. The problems of reconciling gene and species trees, mapping a gene tree into a species tree, and gene tree inference. Abstracts of the First RECOMB Satellite Conference on Open Problems in Algorithmic Biology (RECOMB-AB), St. Petersburg, Russia, August 27–29 2012, P. 48,
  57. K.Yu. Gorbunov, V.A. Lyubetsky. Modelling co-evolution of regulatory systems, genes and species with supercomputers. Proceedings of The 4th International Conference “Mathematical Biology and Bioinformatics”, Pushchino, Moscow region, October 14–19 2012, P. 70–71,
  58. V.A. Lyubetsky, K.Yu. Gorbunov, L.Yu. Rusin. Detecting conflicts in large sets of phylogenetic trees. Proceedings of the “BioSyst.EU 2013 Global systematics” conference, Vienna, Austria, February 18–22 2013, P. 131,
  59. No English citation is currently avaliable for this publication.
    В.А. Любецкий, К.Ю. Горбунов. Задачи и алгоритмы, связанные с хромосомными перестройками. Современные информационные технологии и ИТ-образование, 2013, № 9, стр. 764–768, eLIBRARY: 23020602,
  60. L.Yu. Rusin, E.V. Lyubetskaya, K.Yu. Gorbunov, V.A. Lyubetsky. Reconciliation of gene and species trees. BioMed Research International, Mar 27 2014, Vol. 2014, Art. 642089, 22 pp.
    ⓘ DOI: 10.1155/2014/642089, WOS: 000333909600001, Scopus: 2-s2.0-84899516778, PMID: 24800245, eLIBRARY: 21873983, EDN: SKRJQJ, ISTINA: 6043460. ＄ MESRF 8481 & 14.740.11.1053, RFBR 13-04-40196-H.
  61. V.A. Lyubetsky, K.Yu. Gorbunov. Chromosome structures reconstruction. In: Molecular Phylogenetics, (Eds.: A. Troitsky, L. Rusin, N. Petrov), Moscow: Torus Press, 2014, P. 42.
    ⓘ eLIBRARY: 25432819, EDN: VKOFDL,
  62. No English citation is currently avaliable for this publication.
    Л.И. Рубанов, К.Ю. Горбунов, В.А. Любецкий. Программа для филогенетического исследования совместной эволюции генов и видов – EMBED3GL. Свидетельство о государственной регистрации программы для ЭВМ, 2014, № 2014615607, 29.05.2014, Язык программирования: C/C++, интерфейс MPI, Объем: 329 Кб, Правообладатель: ИППИ РАН.
    ⓘ ФИПС: 2014615607,
  63. No English citation is currently avaliable for this publication.
    Л.И. Рубанов, К.Ю. Горбунов, В.А. Любецкий. Программа построения филогенетического супердерева - SUPER3GL. Свидетельство о государственной регистрации программы для ЭВМ, 2014, № 2014615610, 29.05.2014, Язык программирования: С++, интерфейс MPI, Объем: 296 Кб, Правообладатель: ИППИ РАН.
    ⓘ ФИПС: 2014615610,
  64. No English citation is currently avaliable for this publication.
    Л.И. Рубанов, К.Ю. Горбунов, В.А. Любецкий. Программа построения базисных деревьев для плохо обусловленного набора исходных деревьев генов – BASIS3GL. Свидетельство о государственной регистрации программы для ЭВМ, 2014, № 2014662596, 03.12.2014, Язык программирования: С++, Объем: 248 Кб, Правообладатель: ИППИ РАН.
    ⓘ ФИПС: 2014662596,
  65. V.A. Lyubetsky, A.V. Seliverstov, K.Yu. Gorbunov. Rearrangement of chromosomes: problems, algorithms, databases, and gene expression regulations. The Ninth International Conference on Bioinformatics of Genome Regulation and Structure\Systems Biology (BGRS\SB'2014), Novosibirsk, Russia, Jun 24 2014, oral presentation
  66. No English citation is currently avaliable for this publication.
    В.А. Любецкий, К.Ю. Горбунов. Алгоритм расстановки по дереву предковых хромосомных структур: корректность и результаты. IX Международная научно-практическая конференция «Современные информационные технологии и ИТ-образование», Москва, МГУ им. М. В. Ломоносова, 15 ноября 2014, доклад, i,
  67. No English citation is currently avaliable for this publication.
    К.Ю. Горбунов. Алгоритм перестройки хромосомной структуры. IX Международная научно-практическая конференция «Современные информационные технологии и ИТ-образование», Москва, МГУ им. М. В. Ломоносова, 15 ноября 2014, доклад, i,
  68. No English citation is currently avaliable for this publication.
    К.Ю. Горбунов, В.А. Любецкий. Линейный алгоритм кратчайшей перестройки структур. Семинар по теории кодирования, Москва, Большой Каретный пер., дом 19, комн. 307, 16 декабря 2014, 19:00, доклад, MathNet
  69. A.A. Muchnik, K.Yu. Gorbunov. Algorithmic aspects of decomposition and equivalence of finite-valued transducers. Problems of Information Transmission, Jul 2015, Vol. 51, Iss. 3, P. 267–288.
    ⓘ DOI: 10.1134/S0032946015030059, WOS: 000363254900005, Scopus: 2-s2.0-84944450762, eLIBRARY: 24961755, EDN: VAGESZ. ＄ RSF 14-50-00150.
  70. K.Yu. Gorbunov, R.A. Gershgorin, V.A. Lyubetsky. Rearrangement and inference of chromosome structures. Molecular Biology, May 2015, Vol. 49, No. 3, P. 327–338.
    ⓘ DOI: 10.1134/S0026893315030073, WOS: 000356371700001, Scopus: 2-s2.0-84935847255, eLIBRARY: 23988505, EDN: UEYLOB, ISTINA: 87049104, IITP: 7046. ＄ RSF 14-50-00150.
  71. No English citation is currently avaliable for this publication.
    К.Ю. Горбунов, В.А. Любецкий. Реконструкция предковых хромосомных структур. Современные информационные технологии и ИТ-образование, 2015, том 2, № 11, стр. 600–605.
    ⓘ eLIBRARY: 26167554, EDN: WAQFZV, ИСТИНА: 87049117, ИППИ: 7464. ＄ РНФ 14-50-00150.
  72. R.A. Gershgorin, K.Yu. Gorbunov, A.V. Seliverstov, V.A. Lyubetsky. Evolution of chromosome structures. Proceedings of the 39th IITP RAS Interdisciplinary Conference & School “Information Technology and Systems 2015” (ITaS’15), Sochi, Russia, Sep 7–11 2015, Moscow: IITP, 2015, P. 105–120.
    ⓘ eLIBRARY: 24378278, EDN: UNMFKT, IITP: 8181. ＄ RSF 14-50-00150. i,
  73. V.A. Lyubetsky, R.A. Gershgorin, A.V. Seliverstov, K.Yu. Gorbunov. Algorithms for reconstruction of chromosomal structures. BMC Bioinformatics, Jan 19 2016, Vol. 17, Art. 40, 23 pp.
    ⓘ DOI: 10.1186/s12859-016-0878-z, WOS: 000368414800001, Scopus: 2-s2.0-84954341725, PMID: 26780836, PMC4717669, eLIBRARY: 28465238, EDN: XYXNKL, ISTINA: 39291927, IITP: 7316. ＄ RSF 14-50-00150. i,
  74. No English citation is currently avaliable for this publication.
    К.Ю. Горбунов, В.А. Любецкий. Линейный алгоритм кратчайшей перестройки графов при разных ценах операций. Информационные процессы, 2016, том 16, № 2, стр. 223–236.
    ⓘ eLIBRARY: 26181047, EDN: WAXXPL, ИСТИНА: 38444081, ИППИ: 7458. ＄ РНФ 14-50-00150. i,
  75. No English citation is currently avaliable for this publication.
    К.Ю. Горбунов, В.А. Любецкий. Модифицированный алгоритм преобразования хромосомных структур: условия абсолютной точности. Современные информационные технологии и ИТ-образование, 2016, том 12, № 1, стр. 162–172.
    ⓘ eLIBRARY: 27539231, EDN: XEQRBX, ИСТИНА: 39325274, ИППИ: 8167. ＄ РНФ 14-50-00150.
  76. No English citation is currently avaliable for this publication.
    С.А. Королев, К.Ю. Горбунов, О.А. Зверков, А.В. Селиверстов, В.А. Любецкий. Вырожденные инвертированные повторы в геномах микобактерий. Современные информационные технологии и ИТ-образование, 2016, том 12, № 1, стр. 182–187.
    ⓘ eLIBRARY: 27539233, EDN: XEQRCR, ИСТИНА: 39325396, ИППИ: 7369. ＄ РНФ 14-50-00150.
  77. K.Yu. Gorbunov, V.A. Lyubetsky. A modified algorithm for transformation of chromosomal structures: a condition of absolute exactness. CEUR Workshop Proceedings, Selected Papers of the First International Scientific Conference Convergent Cognitive Information Technologies (Convergent 2016), Moscow, Russia, November 25–26 2016, Vol. 1763, P. 162–172, in Russian.
    ⓘ Scopus: 2-s2.0-85009415092, eLIBRARY: 29474284, EDN: YUZQDB, ISTINA: 87049057, IITP: 7459. ＄ РНФ 14-50-00150. i,
  78. S.A. Korolev, K.Yu. Gorbunov, O.A. Zverkov, A.V. Seliverstov, V.A. Lyubetsky. Degenerate inverted repeats in the genomes of mycobacterium. CEUR Workshop Proceedings, Selected Papers of the First International Scientific Conference Convergent Cognitive Information Technologies (Convergent 2016), Moscow, Russia, November 25–26 2016, Vol. 1763, P. 182–187, in Russian.
    ⓘ Scopus: 2-s2.0-85009399359, eLIBRARY: 29477080, EDN: YVBFML, ISTINA: 87047396, IITP: 7461. ＄ РНФ 14-50-00150. i,
  79. V.A. Lyubetsky, K.Yu. Gorbunov, A.V. Seliverstov. Optimization on graphs: clustering and reconciliation. GraphHPC: Сonference on Parallel LargeSscale Graph Processing, Moscow, Russia, March 3 2016, oral presentation
  80. V.A. Lyubetsky, R.A. Gershgorin, K.Yu. Gorbunov. Chromosome structures: reduction of certain problems with unequal gene content and gene paralogs to integer linear programming. BMC Bioinformatics, Dec 6 2017, Vol. 18, Art. 537, 18 pp.
    ⓘ DOI: 10.1186/s12859-017-1944-x, WOS: 000417558100001, Scopus: 2-s2.0-85043231032, PMID: 29212445, PMC5719933, eLIBRARY: 35519940, EDN: UYCOAT, ISTINA: 88753567, IITP: 7683. ＄ RSF 14-50-00150.
  81. R.A. Gershgorin, K.Yu. Gorbunov, O.A. Zverkov, L.I. Rubanov, A.V. Seliverstov, V.A. Lyubetsky. Highly conserved elements and chromosome structure evolution in mitochondrial genomes in ciliates. Life, Feb 27 2017, Vol. 7, Iss. 1, Art. 9, 11 pp.
    ⓘ DOI: 10.3390/life7010009, WOS: 000398680000008, Scopus: 2-s2.0-85016311163, PMID: 28264444, PMC5370409, eLIBRARY: 29483092, EDN: YVEQKT, ISTINA: 87046898, IITP: 7454. ＄ RSF 14-50-00150. i,
  82. K.Yu. Gorbunov, V.A. Lyubetsky. The minimum-cost transformation of graphs. Doklady Mathematics, Sep 2017, Vol. 96, No. 2, P. 503–505.
    ⓘ DOI: 10.1134/S1064562417050313, WOS: 000415856500023, Scopus: 2-s2.0-85035050622, eLIBRARY: 31050739, EDN: XNNXKS, ISTINA: 87048830, IITP: 7567,
  83. K.Yu. Gorbunov, V.A. Lyubetsky. Linear algorithm for minimal rearrangement of structures. Problems of Information Transmission, Jan 2017, Vol. 53, Iss. 1, P. 55–72.
    ⓘ DOI: 10.1134/S0032946017010057, WOS: 000399821500005, Scopus: 2-s2.0-85018193412, eLIBRARY: 41772731, EDN: OHFFPV, ISTINA: 87048959, IITP: 7455. ＄ RSF 14-50-00150.
  84. K.Yu. Gorbunov, V.A. Lyubetsky. A linear algorithm for the shortest transformation of graphs with different operation costs. Journal of Communications Technology and Electronics, Jun 2017, Vol. 62, No. 6, P. 653–662.
    ⓘ DOI: 10.1134/S1064226917060092, WOS: 000406306000018, Scopus: 2-s2.0-85024099889, eLIBRARY: 31057587, EDN: XNRKPE, ISTINA: 87048972, IITP: 7559. ＄ RSF 14-50-00150.
  85. K.Yu. Gorbunov, V.A. Lyubetsky. Algorithm of transformation of a graph into another one with minimal cost. Informatics and Applications, Jan–Mar 2017, Vol. 11, Iss. 1, P. 79–89, in Russian.
    ⓘ DOI: 10.14357/19922264170107, Scopus: 2-s2.0-85028801879, eLIBRARY: 29159457, EDN: YOCMXT, Mi: ia461, ISTINA: 87049001, IITP: 7456. ＄ RSF 14-50-00150
  86. K.Yu. Gorbunov, V.A. Lyubetsky. Transformation of large chromosome structures: an algorithm of equalization of gene contents. CEUR Workshop Proceedings, 2017, Vol. 2064, Convergent Cognitive Information Technologies 2017, P. 395–401, in Russian, Selected Papers of the II International Scientific Conference Convergent Cognitive Information Technologies (Convergent 2017), Moscow, Russia, November 24–26.
    ⓘ Scopus: 2-s2.0-85044532023, eLIBRARY: 35488743, EDN: XXHHDF, ISTINA: 110758795, IITP: 7669. ＄ РНФ 14-50-00150. i,
  87. V.A. Lyubetsky, L.I. Rubanov, K.Yu. Gorbunov, O.A. Zverkov, A.V. Seliverstov. Highly conserved elements in mitochondrial genomes of ciliates and monocots. Materials of the IX International Congress “Biotechnology: State of the Art and Prospects of Development”, Moscow, Russia, February 20–22 2017, Part 1, P. 393.
    ⓘ eLIBRARY: 29220438, EDN: YPLEZZ, IITP: 8163,
  88. K.Yu. Gorbunov, V.A. Lyubetsky. A linear algorithm for restructuring a graph. Automation and Remote Control, Dec 2018, Vol. 79, Iss. 12, P. 2203–2216.
    ⓘ DOI: 10.1134/S0005117918120093, WOS: 000453228600009, Scopus: 2-s2.0-85058329733, eLIBRARY: 38640456, EDN: VDPHLO, ISTINA: 160477443, IITP: 7704. ＄ RSF 14-50-00150.
  89. V.A. Lyubetsky, E.V. Lyubetskaya, K.Yu. Gorbunov. Linear algorithm for a cyclic graph transformation. Lobachevskii Journal of Mathematics, 2018, Vol. 39, No. 9, P. 1217–1227.
    ⓘ DOI: 10.1134/S1995080218090147, WOS: 000455276100007, Scopus: 2-s2.0-85059767400, eLIBRARY: 44242868, EDN: YUPXBT, ISTINA: 160477593, IITP: 7682. ＄ RSF 14-50-00150.
  90. V.A. Lyubetsky, K.Yu. Gorbunov. A linear algorithms of cyclic graph reconfiguration. GraphHPC: Сonference on Parallel LargeSscale Graph Processing, Moscow, Russia, March 1 2018, oral presentation
  91. K.Yu. Gorbunov, V.A. Lyubetsky. Linear algorithm for reconstruction of chromosome structures. The proceedings of International congress «Biotechnology: state of the art and perspectives», Moscow, Russia, February 25–27 2019, Iss. 17, P. 350–351.
    ⓘ eLIBRARY: 37590378, EDN: GMKSEY, IITP: 8154. ＄ RFBR 18-29-13037.
  92. K.Yu. Gorbunov, V.A. Lyubetsky. Linear time additively exact algorithm for transformation of chain-cycle graphs for arbitrary costs of deletions and insertions. Mathematics, Nov 10 2020, Vol. 8, No. 11, Art. 2001, 30 pp.
    ⓘ DOI: 10.3390/math8112001, WOS: 000593278400001, Scopus: 2-s2.0-85096013784, eLIBRARY: 45188890, EDN: GQOUXC, ISTINA: 332916134, IITP: 8184. ＄ RFBR 18-29-13037.
  93. K.Yu. Gorbunov, V.A. Lyubetsky. An almost exact linear algorithm for transformation of chain-cycle graphs with optimization of the sum of operation costs. Doklady Mathematics, Sep 2020, Vol. 102, No. 2, P. 376–379.
    ⓘ DOI: 10.1134/S1064562420050324, WOS: 000607872900006, Scopus: 2-s2.0-85099402453, eLIBRARY: 45006892, EDN: BSADMD, ISTINA: 349483922, IITP: 8166. ＄ RFBR 18-29-13037.
  94. K.Yu. Gorbunov, V.A. Lyubetsky. Evolution of mitochondrial genomic structures in metazoans: algorithm and software. The proceedings of International forum «Biotechnology: state of the art and perspectives», Moscow, Russia, October 28–30 2020, Iss. 18, P. 261–262.
    ⓘ DOI: 10.37747/2312-640X-2020-18-260-262, eLIBRARY: 44374970, EDN: OCTAYM, IITP: 8178. ＄ RFBR 18-29-13037.
  95. K.Yu. Gorbunov, V.A. Lyubetsky. An almost exact linear complexity algorithm of the shortest transformation of chain-cycle graphs. Eprint, arXiv:2004.14351 [math.CO], Apr 29 2020.
    ⓘ IITP: 8159, i,
  96. K.Yu. Gorbunov, V.A. Lyubetsky. Multiplicatively exact algorithms for transformation and reconstruction of directed path-cycle graphs with repeated edges. Mathematics, Oct 14 2021, Vol. 9, No. 20, Art. 2576.
    ⓘ DOI: 10.3390/math9202576, WOS: 000716057500001, Scopus: 2-s2.0-85117474779, eLIBRARY: 47515617, EDN: AMVFGJ, ISTINA: 402488632, IITP: 8274. ＄ RFBR 18-29-13037.
  97. K.Yu. Gorbunov, V.A. Lyubetsky. Reconstruction of evolution of genome structures with paralogs. The proceedings of International congress «Biotechnology: state of the art and perspectives», Moscow, Russia, October 26–29 2021, Iss. 19, P. 208–209.
    ⓘ DOI: 10.37747/2312-640X-2021-19-207-209, eLIBRARY: 47185007, EDN: FOWJSP. ＄ RFBR 18-29-13037.
  98. K.Yu. Gorbunov, V.A. Lyubetsky. Constructing an evolutionary tree and path–cycle graph evolution along it. Mathematics, Apr 24 2023, Vol. 11, No. 9, Art. 2024.
    ⓘ DOI: 10.3390/math11092024, WOS: 000986948600001, Scopus: 2-s2.0-85159228695, ISTINA: 556631144, IITP: 8556. ＄ RFBR 20-01-00670.
  99. K.Yu. Gorbunov, V.A. Lyubetsky. Algorithms for the reconstruction of genomic structures with proofs of their low polynomial complexity and high exactness. Mathematics, Mar 11 2024, Vol. 12, No. 6, Art. 817.
    ⓘ Scopus: 2-s2.0-85188968210, DOI: 10.3390/math12060817, ISTINA: 637786193, IITP: 8645. ＄ RSF 24-44-00099.

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